miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34339_dre-mir-190b:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 20 tgtgatatgtttgatattcggttgttctcctgcgttttcacgtcaactaaatatcagaca 79
|||||||||||||||||||||||| | || | | ||| |||||||||||||||||||
Sbjct: 13 tgtgatatgtttgatattcggttgctttcttta--tatcatgtcaactaaatatcagaca 70
Query: 80 tattccta 87
||||||||
Sbjct: 71 tattccta 78
>26745_cfa-mir-190b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>27071_eca-mir-190b:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>27412_mdo-mir-190b:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 4 ctgtgtgatatgtttgatattgggttgtt 32
>27781_mml-mir-190b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>28498_hsa-mir-190b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>30264_ptr-mir-190b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>30879_ppy-mir-190b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>31519_oan-mir-190b:mirbase
Length = 144
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 26 ctgtgtgatatgtttgatattaggttgtt 54
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 aatatcagacatattcctacag 90
||||||||||||||||||||||
Sbjct: 72 aatatcagacatattcctacag 93
>31907_mmu-mir-190b:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>32776_rno-mir-190b:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattaggttgtt 34
>33258_bta-mir-190b:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>34018_ssc-mir-190:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatattcggttgtt 45
||||||||||||||||||||| |||||||
Sbjct: 6 ctgtgtgatatgtttgatattgggttgtt 34
>24689_bfl-mir-190:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 gtgatatgtttgatattcggttgtt 45
||||||||||||||||| |||||||
Sbjct: 20 gtgatatgtttgatatttggttgtt 44
>25981_gga-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>26489_tgu-mir-190:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 6 ctgtgtgatatgtttgatat 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 45 caactatatatcaaacatattcctacag 72
>26744_cfa-mir-190a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>27070_eca-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatat 20
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 40 caactatatatcaaacatattcctacag 67
>27411_mdo-mir-190a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>27780_mml-mir-190a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>28320_ggo-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>28497_hsa-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>30110_ppa-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>30263_ptr-mir-190a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>30878_ppy-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>31518_oan-mir-190a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 7 ctgtgtgatatgtttgatat 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 46 caactatatatcaaacatattcctacag 73
>31906_mmu-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 1 ctgtgtgatatgtttgatat 20
>32775_rno-mir-190:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
>33257_bta-mir-190a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 ctgtgtgatatgtttgatat 36
||||||||||||||||||||
Sbjct: 10 ctgtgtgatatgtttgatat 29
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 49 caactatatatcaaacatattcctacag 76
>34338_dre-mir-190:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 80 caactatatatcaaacatattcctacag 107
>34618_fru-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 40 caactatatatcaaacatattcctacag 67
>34765_tni-mir-190:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 caactaaatatcagacatattcctacag 90
|||||| |||||| ||||||||||||||
Sbjct: 40 caactatatatcaaacatattcctacag 67
