miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25842_xtr-mir-223:mirbase
Length = 86
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/75 (90%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 17 cacttagtgtatttgacaagctgagctggacactaaa--agacagagtgtcagtttgtca 74
|||| |||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct: 8 cactgagtgtatttgacaagctgagtccgacactcaatgagacagagtgtcagtttgtca 67
Query: 75 aataccccaagtgag 89
|||||||||||||||
Sbjct: 68 aataccccaagtgag 82
>25669_xla-mir-223:mirbase
Length = 86
Score = 79.8 bits (40), Expect = 4e-16
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 17 cacttagtgtatttgacaagctgagctggacactaaa--agacagagtgtcagtttgtca 74
|||| |||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 8 cactgagtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtca 67
Query: 75 aataccccaagtgag 89
|||||||||||||||
Sbjct: 68 aataccccaagtgag 82
>26013_gga-mir-223:mirbase
Length = 100
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaa--gacagagtgtcagtttgtcaaatacc 80
||||||||||||||||||| | |||||| | | ||||||||||||||||||||||||
Sbjct: 18 gtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatacc 77
Query: 81 ccaagtgag 89
|||||||||
Sbjct: 78 ccaagtgag 86
>27436_mdo-mir-223:mirbase
Length = 111
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 31 gtgtatttgacaagctgagttggacactccgtgtcgtagagtgtcagtttgtcaaatacc 90
Query: 81 ccaagtgag 89
|||||||||
Sbjct: 91 ccaagtgag 99
>26520_tgu-mir-223:mirbase
Length = 71
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 57 cagagtgtcagtttgtcaaataccccaagtgag 89
|||||||||||||||||||||||||||||||||
Sbjct: 36 cagagtgtcagtttgtcaaataccccaagtgag 68
>33303_bta-mir-223:mirbase
Length = 108
Score = 65.9 bits (33), Expect = 5e-12
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagacagagtgtcagtttgtcaaatacccc 82
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtagtagtgtcagtttgtcaaatacccc 86
Query: 83 aagtg 87
|||||
Sbjct: 87 aagtg 91
>27108_eca-mir-223:mirbase
Length = 104
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 28 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 87
Query: 81 ccaagtg 87
|||||||
Sbjct: 88 ccaagtg 94
>28337_ggo-mir-223:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>28544_hsa-mir-223:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>30124_ppa-mir-223:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>30301_ptr-mir-223:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 2e-11
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacactaaaagac--agagtgtcagtttgtcaaatacc 80
||||||||||||||||||| |||||||| | | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 81 ccaagtg 87
|||||||
Sbjct: 87 ccaagtg 93
>34647_fru-mir-223:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 59 gagtgtcagtttgtcaaataccccaagtgagacgtcactagtct 102
||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 45 gagtgtcagtttgtcaaataccccaagtgaggtgtcacttgtct 88
>34795_tni-mir-223:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 8e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 59 gagtgtcagtttgtcaaataccccaagtgag 89
|||||||||||||||||||||||||||||||
Sbjct: 54 gagtgtcagtttgtcaaataccccaagtgag 84
>26784_cfa-mir-223:mirbase
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>27628_sla-mir-223:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>27821_mml-mir-223:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>30918_ppy-mir-223:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>31953_mmu-mir-223:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>32819_rno-mir-223:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agagtgtcagtttgtcaaataccccaagtg 87
||||||||||||||||||||||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtg 93
>31544_oan-mir-223:mirbase
Length = 124
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 gagtgtcagtttgtcaaataccccaagtgag 89
||||||||||||||||||||||| |||||||
Sbjct: 74 gagtgtcagtttgtcaaataccctaagtgag 104
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 23 gtgtatttgacaagctgagctggacact 50
||||||||||||||||||| ||||||||
Sbjct: 35 gtgtatttgacaagctgagttggacact 62
>34384_dre-mir-223:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 gtgtcagtttgtcaaataccccaag 85
|||||||||||||||||||||||||
Sbjct: 70 gtgtcagtttgtcaaataccccaag 94
