miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25948_gga-mir-130b:mirbase
Length = 77
Score = 83.8 bits (42), Expect = 3e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 27 ctgccactctttccctgttgcactactgtccaacgtcacagctagcagtgcaataatgaa 86
||||| |||||||||||||||||||||||| | ||| |||| |||||||||||||||||
Sbjct: 8 ctgcccctctttccctgttgcactactgtc-acggtcgcagcgagcagtgcaataatgaa 66
Query: 87 agggcgtcag 96
||||||||||
Sbjct: 67 agggcgtcag 76
>26460_tgu-mir-130b:mirbase
Length = 132
Score = 83.8 bits (42), Expect = 3e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 27 ctgccactctttccctgttgcactactgtccaacgtcacagctagcagtgcaataatgaa 86
||||| |||||||||||||||||||||||| | ||| |||| |||||||||||||||||
Sbjct: 57 ctgcccctctttccctgttgcactactgtc-acggtcgcagcgagcagtgcaataatgaa 115
Query: 87 agggcgtcag 96
||||||||||
Sbjct: 116 agggcgtcag 125
>25773_xtr-mir-130b:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 9 cactctttccctgttgcactactgt 33
>27023_eca-mir-130b:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
>27729_mml-mir-130b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
>31857_mmu-mir-130b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
>32732_rno-mir-130b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
>33212_bta-mir-130b:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
>33980_ssc-mir-130b:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 11 cactctttccctgttgcactactgt 35
>34291_dre-mir-130b:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactactgt 55
|||||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactactgt 36
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 agcagtgcaataatgaaagggcgtcag 96
|||||||||||||||||||||| ||||
Sbjct: 51 agcagtgcaataatgaaagggcatcag 77
>26699_cfa-mir-130b:mirbase
Length = 60
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 actctttccctgttgcactactgt 55
||||||||||||||||||||||||
Sbjct: 1 actctttccctgttgcactactgt 24
>28443_hsa-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactact 53
|||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactact 34
>30219_ptr-mir-130b:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactact 53
|||||||||||||||||||||||
Sbjct: 11 cactctttccctgttgcactact 33
>30828_ppy-mir-130b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cactctttccctgttgcactact 53
|||||||||||||||||||||||
Sbjct: 12 cactctttccctgttgcactact 34
>26015_gga-mir-301b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tcacagctagcagtgcaata 81
||||||||||||||||||||
Sbjct: 44 tcacagctagcagtgcaata 63
>26016_gga-mir-301b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 62 tcacagctagcagtgcaata 81
||||||||||||||||||||
Sbjct: 44 tcacagctagcagtgcaata 63
