miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 176 bits (89), Expect = 2e-45
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 1 aggcactgcggcccagggtctggtgcggagagggcccacagtggacttggtgacactgta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3 aggcactgcggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgta 62
Query: 61 tgccctcaccgctcagcccctggggctggcttg 93
|||||||||||||||||||||||||||||||||
Sbjct: 63 tgccctcaccgctcagcccctggggctggcttg 95
>28110_mml-mir-675:mirbase
Length = 73
Score = 145 bits (73), Expect = 6e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 12 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 60
Query: 72 ctcagcccctggg 84
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>28990_hsa-mir-675:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 12 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 71
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 72 ctcagcccctggg 84
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 12 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 71
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 72 ctcagcccctggg 84
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
>32290_mmu-mir-675:mirbase
Length = 84
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 tgcggcccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccct 66
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccacagtggacttggt-acactgtatgccct 59
Query: 67 caccgctcagcccctggggctggc 90
||||||||| ||||||| |||||
Sbjct: 60 aaccgctcagtccctgggtctggc 83
>32291_mmu-mir-675:mirbase
Length = 84
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 tgcggcccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccct 66
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccacagtggacttggt-acactgtatgccct 59
Query: 67 caccgctcagcccctggggctggc 90
||||||||| ||||||| |||||
Sbjct: 60 aaccgctcagtccctgggtctggc 83
>32979_rno-mir-675:mirbase
Length = 84
Score = 111 bits (56), Expect = 9e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 7 tgcggcccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccct 66
|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 1 tgcggcccagggactggtgcggaaagggcccacagtggacttggtg-cactgtatgccct 59
Query: 67 caccgctcagcccctggggctggc 90
||||||||| ||||||| |||||
Sbjct: 60 aaccgctcagtccctgggtctggc 83
>27256_eca-mir-675:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 12 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 71
||||||| |||| ||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct: 1 cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
Query: 72 ctcagcccctggg 84
|||||||||||||
Sbjct: 61 ctcagcccctggg 73
