miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28832_hsa-mir-548h-2:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||||||| ||||||||||||||||||||
Sbjct: 32 aaaccgcgattacttttgcaccaacctaata 2
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaatat 63
|||||||||||||||||||||
Sbjct: 66 acttttgcaccaacctaatat 86
>28833_hsa-mir-548h-3:mirbase
Length = 118
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||||||| ||||||||||||||||||||
Sbjct: 45 aaaccgcgattacttttgcaccaacctaata 15
>28834_hsa-mir-548h-4:mirbase
Length = 111
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||||||| ||||||||||||||||||||
Sbjct: 33 aaaccgcgattacttttgcaccaacctaata 3
Score = 46.1 bits (23), Expect = 3e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 74 aaaccgcaattacttttgcaccaacctaata 104
>28818_hsa-mir-548c:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 54 aaagtaatggcaaaaaccgcaattacttttgcaccaacctaata 11
>28819_hsa-mir-548c:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 54 aaagtaatggcaaaaaccgcaattacttttgcaccaacctaata 11
>28857_hsa-mir-548z:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 44 aaagtaatggcaaaaaccgcaattacttttgcaccaacctaata 87
>30473_ptr-mir-548c:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 2e-07
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 54 aaagtaatggcaaaaaccgcaattacttttgcaccaacctaata 11
>28826_hsa-mir-548f-2:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaatattt 65
|||||||||||||||||||||||
Sbjct: 72 acttttgcaccaacctaatattt 94
>28848_hsa-mir-548q:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 41/46 (89%), Gaps = 2/46 (4%)
Strand = Plus / Minus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaatat 63
||||||||||||||| |||| || |||||||||||| ||||||||
Sbjct: 46 aaaagtaatggcaaaaaccgccattacttttgcaccagcctaatat 1
>28831_hsa-mir-548h-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaat 61
|||||||||| ||||||||||| |||||||
Sbjct: 37 aaaccgcgattacttttgcacccacctaat 8
>30476_ptr-mir-548h:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaat 61
|||||||||| ||||||||||| |||||||
Sbjct: 37 aaaccgcgattacttttgcacccacctaat 8
>28027_mml-mir-579:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 caaaccgcgatcacttttgcaccaacctaatat 63
||||||||||| ||||||||| ||||||||||
Sbjct: 34 caaaccgcgattacttttgcattaacctaatat 2
>28799_hsa-mir-548aa-1:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaatat 63
|||||||||||||||||||||
Sbjct: 68 acttttgcaccaacctaatat 88
>28815_hsa-mir-548an:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaat 61
||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 40 aaaagtaatggcaaaaaccgcaattccttttgcaccaacctaat 83
>28820_hsa-mir-548d-1:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaatat 63
|||||||||||||||||||||
Sbjct: 30 acttttgcaccaacctaatat 10
>28821_hsa-mir-548d-1:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaatat 63
|||||||||||||||||||||
Sbjct: 30 acttttgcaccaacctaatat 10
>28836_hsa-mir-548i-1:mirbase
Length = 149
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 64 taatggcaaaatccgcaattacttttgcaccaacctaata 25
>28893_hsa-mir-579:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 caaaccgcgatcacttttgcaccaacctaatat 63
||||||||||| ||||||||| ||||||||||
Sbjct: 34 caaaccgcgattacttttgcattaacctaatat 2
>30477_ptr-mir-548i-1:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 64 taatggcaaaatccgcaattacttttgcaccaacctaata 25
>30478_ptr-mir-548i-2:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 64 taatggcaaaatccgcaattacttttgcaccaacctaata 25
>30480_ptr-mir-548i-4:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 64 taatggcaaaatccgcaattacttttgcaccaacctaata 25
>30481_ptr-mir-548i-5:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 63 taatggcaaaatccgcaattacttttgcaccaacctaata 24
>30482_ptr-mir-548i-6:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 5e-05
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 63 taatggcaaaatccgcaattacttttgcaccaacctaata 24
>30515_ptr-mir-579:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 caaaccgcgatcacttttgcaccaacctaatat 63
||||||||||| ||||||||| ||||||||||
Sbjct: 33 caaaccgcgattacttttgcattaacctaatat 1
>31158_ppy-mir-579:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 31 caaaccgcgatcacttttgcaccaacctaatat 63
||||||||||| ||||||||| ||||||||||
Sbjct: 34 caaaccgcgattacttttgcattaacctaatat 2
>27999_mml-mir-548d:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 30 acttttgcaccaacctaata 11
>28000_mml-mir-548d:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 30 acttttgcaccaacctaata 11
>28802_hsa-mir-548ac:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 21 acttttgcaccaacctaata 2
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9 taggttagtgcaaaagtaat 28
||||||||||||||||||||
Sbjct: 84 taggttagtgcaaaagtaat 65
>28811_hsa-mir-548aj-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 24 acttttgcaccaacctaata 5
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaatattta 66
|||||| |||||||||||||||||
Sbjct: 69 acttttacaccaacctaatattta 92
>28827_hsa-mir-548f-3:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 67 acttttgcaccaacctaata 86
>28828_hsa-mir-548f-4:mirbase
Length = 105
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 31 acttttgcaccaacctaata 12
>28842_hsa-mir-548l:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 20 acttttgcaccaacctaata 1
>28856_hsa-mir-548y:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 28 acttttgcaccaacctaata 9
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaaccta 59
|||||| ||| |||||||||||||||||
Sbjct: 62 aaaccgtgattacttttgcaccaaccta 89
>30474_ptr-mir-548f-1:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 61 acttttgcaccaacctaata 80
>30475_ptr-mir-548f-2:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 67 acttttgcaccaacctaata 86
>30485_ptr-mir-548l:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaata 62
||||||||||||||||||||
Sbjct: 20 acttttgcaccaacctaata 1
>28796_hsa-mir-548a-2:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 40/46 (86%), Gaps = 2/46 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaacc--gcgatcacttttgcaccaacctaatat 63
||||||||||||||| | || || ||||||||||||| |||||||
Sbjct: 50 aaaagtaatggcaaaactggcaattacttttgcaccaaactaatat 95
>28800_hsa-mir-548aa-2:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 cttttgcaccaacctaata 62
|||||||||||||||||||
Sbjct: 22 cttttgcaccaacctaata 4
>28808_hsa-mir-548ah:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 40 atcacttttgcaccaacct 58
|||||||||||||||||||
Sbjct: 19 atcacttttgcaccaacct 1
>28822_hsa-mir-548d-2:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 cttttgcaccaacctaata 62
|||||||||||||||||||
Sbjct: 76 cttttgcaccaacctaata 94
>28823_hsa-mir-548d-2:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 cttttgcaccaacctaata 62
|||||||||||||||||||
Sbjct: 76 cttttgcaccaacctaata 94
>28824_hsa-mir-548e:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 7e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||||||| |||||| ||||||||||||
Sbjct: 32 aaaccgcgattgcttttgtaccaacctaata 2
>28825_hsa-mir-548f-1:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 43 acttttgcaccaacctaat 61
|||||||||||||||||||
Sbjct: 19 acttttgcaccaacctaat 1
>28843_hsa-mir-548m:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 46 tttgcaccaacctaatatt 64
|||||||||||||||||||
Sbjct: 67 tttgcaccaacctaatatt 85
>28850_hsa-mir-548t:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcacca 54
||||| |||||||||||||||||
Sbjct: 27 aaaccacgatcacttttgcacca 5
>28854_hsa-mir-548x:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 aggttagtgcaaaagtaat 28
|||||||||||||||||||
Sbjct: 1 aggttagtgcaaaagtaat 19
>30479_ptr-mir-548i-3:mirbase
Length = 148
Score = 38.2 bits (19), Expect = 7e-04
Identities = 34/38 (89%), Gaps = 2/38 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaa 60
|||||||||| |||| || ||||||||||||||||||
Sbjct: 63 taatggcaaaatccgcaattacttttgcaccaacctaa 26
