miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>29335_hsa-mir-3179-1:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 60

                                  
Query: 69 gaaatttaaacgtctgtgatcctg 92
          ||||||||||||||||||||||||
Sbjct: 61 gaaatttaaacgtctgtgatcctg 84



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 60 agaaggggtgaaatttaaacgtctgtgatcctg 92
          |||||| ||| ||||||||||||||||||||||
Sbjct: 33 agaaggagtgtaatttaaacgtctgtgatcctg 1



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 9  caggatcacagacgtttaaattacactccttct 41
          |||||||||||||||||||||| ||| ||||||
Sbjct: 84 caggatcacagacgtttaaatttcaccccttct 52




>29336_hsa-mir-3179-2:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 60

                                  
Query: 69 gaaatttaaacgtctgtgatcctg 92
          ||||||||||||||||||||||||
Sbjct: 61 gaaatttaaacgtctgtgatcctg 84



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 60 agaaggggtgaaatttaaacgtctgtgatcctg 92
          |||||| ||| ||||||||||||||||||||||
Sbjct: 33 agaaggagtgtaatttaaacgtctgtgatcctg 1



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 9  caggatcacagacgtttaaattacactccttct 41
          |||||||||||||||||||||| ||| ||||||
Sbjct: 84 caggatcacagacgtttaaatttcaccccttct 52




>29337_hsa-mir-3179-3:mirbase
          Length = 84

 Score =  167 bits (84), Expect = 2e-42
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                      
Query: 9  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 68
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caggatcacagacgtttaaattacactccttctgctgtgccttacagcagtagaaggggt 60

                                  
Query: 69 gaaatttaaacgtctgtgatcctg 92
          ||||||||||||||||||||||||
Sbjct: 61 gaaatttaaacgtctgtgatcctg 84



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 60 agaaggggtgaaatttaaacgtctgtgatcctg 92
          |||||| ||| ||||||||||||||||||||||
Sbjct: 33 agaaggagtgtaatttaaacgtctgtgatcctg 1



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                           
Query: 9  caggatcacagacgtttaaattacactccttct 41
          |||||||||||||||||||||| ||| ||||||
Sbjct: 84 caggatcacagacgtttaaatttcaccccttct 52