miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 194 bits (98), Expect = 1e-50
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 11 tgaggaattacagggcaactctccttaagcaaaaatggatgtgcttttctttgcataatt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaggaattacagggcaactctccttaagcaaaaatggatgtgcttttctttgcataatt 60
Query: 71 cgattttgccaaaggagatttgccctgccattcactca 108
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgattttgccaaaggagatttgccctgccattcactca 98
>41151_tcc-MIR399f:mirbase
Length = 111
Score = 87.7 bits (44), Expect = 2e-18
Identities = 95/110 (86%), Gaps = 4/110 (3%)
Strand = Plus / Plus
Query: 5 tggagttgaggaattacagggcaactctccttaagcaaaaatggatgtgcttttctttgc 64
||||||||||||||||||| |||| ||||||| |||| ||||| | |||| ||| |
Sbjct: 3 tggagttgaggaattacagagcaattctccttcagcacaaatgcttatgctc--ctt--c 58
Query: 65 ataattcgattttgccaaaggagatttgccctgccattcactcacacaat 114
||| ||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 59 atagttctattttgccagaggagatttgccctgccattcactcacacaat 108
>41250_csi-MIR399e:mirbase
Length = 154
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccattcactc 107
|||||||||||||| ||||||||||||||||||
Sbjct: 16 tttgccaaaggagaattgccctgccattcactc 48
>41248_csi-MIR399c:mirbase
Length = 149
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccattcactc 107
|||||||||||||| ||||||||||||||||||
Sbjct: 107 tttgccaaaggagaattgccctgccattcactc 139
>40739_mtr-MIR399i:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
||||||||||||||||||||||||||||
Sbjct: 63 tttgccaaaggagatttgccctgccatt 90
>40738_mtr-MIR399h:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
||||||||||||||||||||||||||||
Sbjct: 63 tttgccaaaggagatttgccctgccatt 90
>40733_mtr-MIR399c:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
||||||||||||||||||||||||||||
Sbjct: 78 tttgccaaaggagatttgccctgccatt 105
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 74 ttttgccaaaggagatttgccctgccattca 104
||||||||||||||| |||||||||||||||
Sbjct: 69 ttttgccaaaggagaattgccctgccattca 99
>42819_zma-MIR399a:mirbase
Length = 123
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccctgccattcac 105
||||||||||||| ||||||||||||||||
Sbjct: 83 ttgccaaaggagaattgccctgccattcac 112
>41675_vvi-MIR399h:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 74 ttttgccaaaggagatttgccctgccattc 103
||||||||||||||| ||||||||||||||
Sbjct: 57 ttttgccaaaggagaattgccctgccattc 86
>41453_ptc-MIR399f:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 74 ttttgccaaaggagatttgccctgccattc 103
||||||||||||||| ||||||||||||||
Sbjct: 69 ttttgccaaaggagaattgccctgccattc 98
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccctgccattca 104
||||||||||||| |||||||||||||||
Sbjct: 109 ttgccaaaggagaattgccctgccattca 137
>42042_osa-MIR399b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| |||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| |||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctgccattca 92
>40741_mtr-MIR399k:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccctgccatt 102
|||||||||| |||||||||||||||||
Sbjct: 67 tttgccaaagaagatttgccctgccatt 94
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattc 103
|||||||||||| ||||||||||||||
Sbjct: 93 tgccaaaggagaattgccctgccattc 119
>42047_osa-MIR399g:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattcactc 107
||||||||||||||||||| || ||||||||
Sbjct: 89 tgccaaaggagatttgcccagcgattcactc 119
>41150_tcc-MIR399e:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 78 gccaaaggagatttgccctgccattca 104
||||||||||| |||||||||||||||
Sbjct: 78 gccaaaggagaattgccctgccattca 104
>42043_osa-MIR399c:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattcac 105
|||||||||||| ||||||||| ||||||
Sbjct: 80 tgccaaaggagaattgccctgcgattcac 108
>41892_hvu-MIR399:mirbase
Length = 131
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgccc 95
|||||||||||||||||||||
Sbjct: 100 tttgccaaaggagatttgccc 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 75 tttgccaaaggagatttgcc 94
||||||||||||||||||||
Sbjct: 19 tttgccaaaggagatttgcc 38
>40092_ath-MIR399a:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctg 97
|||||||||||||||||||||
Sbjct: 93 tgccaaaggagatttgccctg 113
>39889_aly-MIR399f:mirbase
Length = 167
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctg 97
|||||||||||||||||||||
Sbjct: 112 tgccaaaggagatttgccctg 132
>42598_sbi-MIR399j:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccctgcc 99
||||||||||||| ||||||||||
Sbjct: 70 ttgccaaaggagaattgccctgcc 93
>42590_sbi-MIR399b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| ||||||||||||||
Sbjct: 82 tgccaaaggagagctgccctgccattca 109
>42049_osa-MIR399i:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
|||||||||||| ||||||||||||||
Sbjct: 86 tgccaaaggagagctgccctgccattca 113
>41448_ptc-MIR399a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
||||||||||||||||||| || |||||
Sbjct: 91 tgccaaaggagatttgccccgcaattca 118
>41153_tcc-MIR399h:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
||||||||||||||||||| || |||||
Sbjct: 77 tgccaaaggagatttgccccgcaattca 104
>40095_ath-MIR399d:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
||||||||||||||||||| || |||||
Sbjct: 70 tgccaaaggagatttgccccgcaattca 97
>39893_aly-MIR399j:mirbase
Length = 136
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 95 ttgccaaaggagatttgccc 114
>39892_aly-MIR399i:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
||||||||||||||||||| || |||||
Sbjct: 92 tgccaaaggagatttgccccgcaattca 119
>39891_aly-MIR399h:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 ttgccaaaggagatttgccc 95
||||||||||||||||||||
Sbjct: 81 ttgccaaaggagatttgccc 100
>39887_aly-MIR399d:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 77 tgccaaaggagatttgccctgccattca 104
||||||||||||||||||| || |||||
Sbjct: 84 tgccaaaggagatttgccccgcaattca 111
