miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28434_hsa-mir-126:mirbase
Length = 85
Score = 126 bits (62), Expect = 3e-30
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1 tgccgtggacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaa 59
||||||||||||||||||||||||||||| | | || |||||||||||||||||| ||||
Sbjct: 85 tgccgtggacggcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaa 26
Query: 60 aagtaataatgtsccgtcgccagc 83
|||||||||||| |||||||||||
Sbjct: 25 aagtaataatgtcccgtcgccagc 2
>30212_ptr-mir-126:mirbase
Length = 84
Score = 126 bits (62), Expect = 3e-30
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1 tgccgtggacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaa 59
||||||||||||||||||||||||||||| | | || |||||||||||||||||| ||||
Sbjct: 84 tgccgtggacggcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaa 25
Query: 60 aagtaataatgtsccgtcgccagc 83
|||||||||||| |||||||||||
Sbjct: 24 aagtaataatgtcccgtcgccagc 1
>30821_ppy-mir-126:mirbase
Length = 81
Score = 118 bits (58), Expect = 7e-28
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 5 gtggacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagt 63
||||||||||||||||||||||||| | | || |||||||||||||||||| ||||||||
Sbjct: 81 gtggacggcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagt 22
Query: 64 aataatgtsccgtcgccagc 83
|||||||| |||||||||||
Sbjct: 21 aataatgtcccgtcgccagc 2
>27013_eca-mir-126:mirbase
Length = 73
Score = 102 bits (50), Expect = 6e-23
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 8 gacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaat 66
|||||||||||||||||||||| | | || |||||||||||||||||| |||||||||||
Sbjct: 72 gacggcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaat 13
Query: 67 aatgtsccgtcg 78
||||| ||||||
Sbjct: 12 aatgtcccgtcg 1
>27014_eca-mir-126:mirbase
Length = 73
Score = 102 bits (50), Expect = 6e-23
Identities = 66/72 (91%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 8 gacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaat 66
|||||||||||||||||||||| | | || |||||||||||||||||| |||||||||||
Sbjct: 72 gacggcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaat 13
Query: 67 aatgtsccgtcg 78
||||| ||||||
Sbjct: 12 aatgtcccgtcg 1
>27721_mml-mir-126:mirbase
Length = 85
Score = 93.9 bits (46), Expect = 2e-20
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 5 gtggacggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagt 63
|||||| |||||||||||||||||| | | || |||||||||||||||||| ||||||||
Sbjct: 81 gtggacagcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagt 22
Query: 64 aataatgtsccgtcgccagc 83
|||||||| || || |||||
Sbjct: 21 aataatgtcccatcaccagc 2
>33973_ssc-mir-126:mirbase
Length = 73
Score = 93.9 bits (46), Expect = 2e-20
Identities = 62/68 (91%), Gaps = 1/68 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 68 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 9
Query: 71 tsccgtcg 78
| ||||||
Sbjct: 8 tcccgtcg 1
>33204_bta-mir-126:mirbase
Length = 73
Score = 91.9 bits (45), Expect = 6e-20
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 68 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 9
Query: 71 tsccgtc 77
| |||||
Sbjct: 8 tcccgtc 2
>25944_gga-mir-126:mirbase
Length = 84
Score = 87.8 bits (43), Expect = 1e-18
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 73 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 14
Query: 71 tsccgtcgccagc 83
||||| |||||
Sbjct: 13 ggccgtcaccagc 1
>26455_tgu-mir-126:mirbase
Length = 132
Score = 87.8 bits (43), Expect = 1e-18
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 123 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 64
Query: 71 tsccgtcgccagc 83
||||| |||||
Sbjct: 63 ggccgtcaccagc 51
>31847_mmu-mir-126:mirbase
Length = 73
Score = 83.7 bits (41), Expect = 2e-17
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 68 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 9
Query: 71 t 71
|
Sbjct: 8 t 8
>31848_mmu-mir-126:mirbase
Length = 73
Score = 83.7 bits (41), Expect = 2e-17
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 68 gcgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 9
Query: 71 t 71
|
Sbjct: 8 t 8
>32725_rno-mir-126:mirbase
Length = 73
Score = 81.7 bits (40), Expect = 7e-17
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatgt 71
||||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||
Sbjct: 67 cgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatgt 8
>33060_rno-mir-3567:mirbase
Length = 118
Score = 81.7 bits (40), Expect = 7e-17
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatgt 71
||||||||||||||||| | | || |||||||||||||||||| ||||||||||||||||
Sbjct: 28 cgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatgt 87
>26692_cfa-mir-126:mirbase
Length = 59
Score = 79.7 bits (39), Expect = 3e-16
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
||||||||||||||||| | | || |||||||||||||||||| |||||||||||||||
Sbjct: 59 cgcattattactcacggtacgagtttgaagtgtcacagcgcgtaccaaaagtaataatg 1
>27377_mdo-mir-126:mirbase
Length = 69
Score = 75.6 bits (37), Expect = 5e-15
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 11 ggcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataat 69
||||||||||||||||||| | | || ||| |||||||||||||| ||||||||||||||
Sbjct: 65 ggcgcattattactcacggtacgagtttgatgtgtcacagcgcgtaccaaaagtaataat 6
Query: 70 g 70
|
Sbjct: 5 g 5
>31481_oan-mir-126:mirbase
Length = 110
Score = 71.6 bits (35), Expect = 8e-14
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Minus
Query: 13 cgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
||||||||||||||||| | | || ||||| |||||||||||| |||||||||||||||
Sbjct: 87 cgcattattactcacggtacgagtttgaagcgtcacagcgcgtaccaaaagtaataatg 29
>25767_xtr-mir-126:mirbase
Length = 69
Score = 65.5 bits (32), Expect = 6e-12
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Minus
Query: 12 gcgcattattactcacggka-grgtatgaagtgtcacagcgcgttccaaaagtaataatg 70
|||||||||||||||||| | | || ||| ||| |||||||||| |||||||||||||||
Sbjct: 67 gcgcattattactcacggtacgagtttgatgtgacacagcgcgtaccaaaagtaataatg 8
>34283_dre-mir-126a:mirbase
Length = 101
Score = 39.1 bits (19), Expect = 5e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 48 agcgcgttccaaaagtaataatg 70
||||||| |||||||||||||||
Sbjct: 48 agcgcgtaccaaaagtaataatg 26
>34284_dre-mir-126b:mirbase
Length = 103
Score = 39.1 bits (19), Expect = 5e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 48 agcgcgttccaaaagtaataatg 70
||||||| |||||||||||||||
Sbjct: 45 agcgcgtaccaaaagtaataatg 23
>34590_fru-mir-126:mirbase
Length = 63
Score = 39.1 bits (19), Expect = 5e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 48 agcgcgttccaaaagtaataatg 70
||||||| |||||||||||||||
Sbjct: 28 agcgcgtaccaaaagtaataatg 6
>34737_tni-mir-126:mirbase
Length = 63
Score = 39.1 bits (19), Expect = 5e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 48 agcgcgttccaaaagtaataatg 70
||||||| |||||||||||||||
Sbjct: 28 agcgcgtaccaaaagtaataatg 6
