miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31220_ppy-mir-650:mirbase
Length = 95
Score = 131 bits (66), Expect = 7e-32
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 5 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctggtctctgctcc 64
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 65 tcctcaccctcctc 78
>28968_hsa-mir-650:mirbase
Length = 96
Score = 115 bits (58), Expect = 4e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |
Sbjct: 5 gctggggtctcaggaggcagcgctctcaggacgtcaccaccatggcctgggctctgctcc 64
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 65 tcctcaccctcctc 78
>28078_mml-mir-650a-1:mirbase
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
Sbjct: 5 gctgggatctcaggaggcagcgctctcaggacgtctccaccatggtctgggctctgctcc 64
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 65 tcctcaccctcctc 78
>28080_mml-mir-650b:mirbase
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |
Sbjct: 5 gctggggtctcaggaggcagcgctctcgggacatctccaccatggcctgggatctgctcc 64
Query: 61 tcctcaccctcctc 74
|| |||||||||||
Sbjct: 65 tcttcaccctcctc 78
>28079_mml-mir-650a-2:mirbase
Length = 95
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||| |||||||||||||| ||||| |||| |||||||||||| |||||||||||| |
Sbjct: 5 gctgggatctcaggaggcagcgctctcaggacttctccaccatggtctgggctctgctcc 64
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 65 tcctcaccctcctc 78
>28082_mml-mir-650d:mirbase
Length = 92
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |
Sbjct: 5 gctggggtctcaggagacagtgctgtcgggacgtctccaccatggcctgggctctgctcc 64
Query: 61 tcctcaccct 70
||||||||||
Sbjct: 65 tcctcaccct 74
>30571_ptr-mir-650:mirbase
Length = 95
Score = 99.6 bits (50), Expect = 3e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||| |
Sbjct: 4 gctggggtcttaggaggcagcgctctcaggacgtcaccaccatggccagggctctgctcc 63
Query: 61 tcctcaccctcctc 74
||||||||||||||
Sbjct: 64 tcctcaccctcctc 77
>28081_mml-mir-650c:mirbase
Length = 91
Score = 73.8 bits (37), Expect = 1e-14
Identities = 65/74 (87%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 1 gctggggtctcaggaggcagctctctcgggacgtctccaccatggcctgggctctgctgc 60
|||||||| |||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 5 gctggggtgtcaggaggcagcgctctc----agtctccaccatggcctgggctctgctcc 60
Query: 61 tcctcaccctcctc 74
||||||| ||||||
Sbjct: 61 tcctcactctcctc 74
