miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>29141_hsa-mir-1285-1:mirbase
          Length = 84

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 61 tttgttgcccaggctggtctcaaactcc 88
          ||||||||||||||||||||||||||||
Sbjct: 20 tttgttgcccaggctggtctcaaactcc 47

>30698_ptr-mir-1285:mirbase
          Length = 83

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 61 tttgttgcccaggctggtctcaaactcc 88
          ||||||||||||||||||||||||||||
Sbjct: 20 tttgttgcccaggctggtctcaaactcc 47

>31341_ppy-mir-1285a:mirbase
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 65 ttgcccaggctggtctcaaactcc 88
          ||||||||||||||||||||||||
Sbjct: 24 ttgcccaggctggtctcaaactcc 47

>34143_ssc-mir-1285:mirbase
          Length = 80

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                           
Query: 45 agagacggggtcttgttttgttgcccaggctgg 77
          ||||||||||||| | | |||||||||||||||
Sbjct: 76 agagacggggtctcgctatgttgcccaggctgg 44