miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>29237_hsa-mir-3118-1:mirbase
Length = 75
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 4 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 61
Query: 64 attcttgtagtgtg 77
||||||||||||||
Sbjct: 62 attcttgtagtgtg 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcacaca-taatcactatgtgactgcattatgaa 62
||||||||| ||||||||||||||| ||||| | | || | | ||||| |||||||||||
Sbjct: 74 acactacaagaattttcataatgcagtcacatagtgatta-tgtgtgattgcattatgaa 16
Query: 63 aattcttgtagtgtg 77
|||| ||||||||||
Sbjct: 15 aattattgtagtgtg 1
>29239_hsa-mir-3118-3:mirbase
Length = 75
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 4 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 61
Query: 64 attcttgtagtgtg 77
||||||||||||||
Sbjct: 62 attcttgtagtgtg 75
Score = 54.0 bits (27), Expect = 1e-08
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcacaca-taatcactatgtgactgcattatgaa 62
||||||||| ||||||||||||||| ||||| | | || | | ||||| |||||||||||
Sbjct: 74 acactacaagaattttcataatgcagtcacatagtgatta-tgtgtgattgcattatgaa 16
Query: 63 aattcttgtagtgtg 77
|||| ||||||||||
Sbjct: 15 aattattgtagtgtg 1
>29238_hsa-mir-3118-2:mirbase
Length = 73
Score = 145 bits (73), Expect = 5e-36
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 4 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acactacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaa 60
Query: 64 attcttgtagtgt 76
|||||||||||||
Sbjct: 61 attcttgtagtgt 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 64/74 (86%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcacaca-taatcactatgtgactgcattatgaa 62
||||||||| ||||||||||||||| ||||| | | || | | ||||| |||||||||||
Sbjct: 73 acactacaagaattttcataatgcagtcacatagtgatta-tgtgtgattgcattatgaa 15
Query: 63 aattcttgtagtgt 76
|||| |||||||||
Sbjct: 14 aattattgtagtgt 1
>29240_hsa-mir-3118-4:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 6 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 65
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
Query: 66 tcttgtagtgtg 77
|||| |||||||
Sbjct: 64 tcttctagtgtg 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 46 tgtgactgcattatgaaaattcttgtagt 74
||||| ||||||||||||||| |||||||
Sbjct: 32 tgtgattgcattatgaaaattattgtagt 4
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcacac 35
|||||| || ||||||||||||||| ||||||
Sbjct: 74 acactagaagaattttcataatgcagtcacac 43
>29242_hsa-mir-3118-6:mirbase
Length = 75
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 6 actacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaat 65
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 4 actacaataattttcataatgcaatcacacacaatcaccgtgtgactgcattatgaaaat 63
Query: 66 tcttgtagtgtg 77
|||| |||||||
Sbjct: 64 tcttctagtgtg 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 46 tgtgactgcattatgaaaattcttgtagt 74
||||| ||||||||||||||| |||||||
Sbjct: 32 tgtgattgcattatgaaaattattgtagt 4
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcacac 35
|||||| || ||||||||||||||| ||||||
Sbjct: 74 acactagaagaattttcataatgcagtcacac 43
>29241_hsa-mir-3118-5:mirbase
Length = 76
Score = 107 bits (54), Expect = 1e-24
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 8 tacaataattttcataatgcaatcacacataatcactatgtgactgcattatgaaaattc 67
||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 7 tacaataatattcataatgcaatcacacacaatcaccatgtgactgcattatgaaaattc 66
Query: 68 ttgtagtgtg 77
|| |||||||
Sbjct: 67 ttctagtgtg 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 4 acactacaataattttcataatgcaatcaca 34
|||||| || ||||||||||||||| |||||
Sbjct: 75 acactagaagaattttcataatgcagtcaca 45
