miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28872_hsa-mir-558:mirbase
Length = 94
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 gtgtgtgtggttattttggtaaagtagctctagactctattatagtttcctgagctgctg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gtgtgtgtggttattttggtatagtagctctagactctattatagtttcctgagctgctg 70
Query: 61 taccaaaataccacaaacgg 80
||||||||||||||||||||
Sbjct: 71 taccaaaataccacaaacgg 90
>30500_ptr-mir-558:mirbase
Length = 93
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 1 gtgtgtgtggttattttggtaaagtagctctagactctattatagtttcctgagctgctg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gtgtgtgtggttattttggtatagtagctctagactctattatagtttcctgagctgctg 69
Query: 61 taccaaaataccacaaa 77
|||||||||||||||||
Sbjct: 70 taccaaaataccacaaa 86
>31142_ppy-mir-558:mirbase
Length = 94
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 1 gtgtgtgtggttattttggtaaagtagctctagactctattatagtttcctgagctgctg 60
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 gtgtgtgtggttattttggtatagtagctctaggctctattatagtttcctgagctgctg 70
Query: 61 taccaaaataccacaaac 78
||||||||||||||||||
Sbjct: 71 taccaaaataccacaaac 88
>28013_mml-mir-558:mirbase
Length = 94
Score = 123 bits (62), Expect = 2e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 1 gtgtgtgtggttattttggtaaagtagctctagactctattatagtttcctgagctgctg 60
|||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gtgtttgtgtttattttggcatagtagctctagactctattatagtttcctgagctgctg 70
Query: 61 taccaaaataccacaaac 78
||||||||||||||||||
Sbjct: 71 taccaaaataccacaaac 88
