miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41712_vvi-MIR3631c:mirbase
Length = 335
Score = 131 bits (66), Expect = 3e-31
Identities = 93/102 (91%)
Strand = Plus / Minus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagttg 132
||||||||||||||||| |||||||||||| |||||||||||||| |||| |||| ||||
Sbjct: 224 taaaagtaacttgttgatatcatccaatatgattaaagtgaacttattattaatatgttg 165
Query: 133 agtttagttatattgaattatgtcaataggttacttttaact 174
||||||||||||||| || ||||||| | |||||||||||||
Sbjct: 164 agtttagttatattggatgatgtcaacatgttacttttaact 123
Score = 75.8 bits (38), Expect = 1e-14
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagttg 132
|||||||||| ||||||||||||||||||||| |||| | ||| | ||| ||||||||
Sbjct: 126 taaaagtaacatgttgacatcatccaatataactaaactcaacatattaataataagttc 185
Query: 133 agtttagttatattgaattatgtcaataggttacttttaactgaat 178
| |||| | |||||| || || |||| | |||||||||||||||||
Sbjct: 186 actttaatcatattggatgatatcaacaagttacttttaactgaat 231
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 190 aaatattttgatattttttattcagttaaaa 220
||||||||| ||||||||||||||||||||
Sbjct: 250 aaatattttagtattttttattcagttaaaa 220
>41710_vvi-MIR3631a:mirbase
Length = 223
Score = 123 bits (62), Expect = 7e-29
Identities = 95/106 (89%)
Strand = Plus / Minus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagttg 132
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct: 161 taaaagtaacttgttgacatcatccaatatagctaaaatgaacttgttatcaataggttc 102
Query: 133 agtttagttatattgaattatgtcaataggttacttttaactgaat 178
|||||| |||||||| || ||||||| | |||||||||| ||||||
Sbjct: 101 agtttaattatattggatgatgtcaacatgttacttttagctgaat 56
Score = 93.7 bits (47), Expect = 6e-20
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 72 ctaaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagtt 131
||||||||||| |||||||||||||||||||||||||| ||||| | || || |||||
Sbjct: 62 ctaaaagtaacatgttgacatcatccaatataattaaactgaacctattgataacaagtt 121
Query: 132 gagtttagttatattgaattatgtcaataggttacttttaactgaat 178
| ||||| ||||||| || ||||||| | |||||||||||||||||
Sbjct: 122 cattttagctatattggatgatgtcaacaagttacttttaactgaat 168
>41711_vvi-MIR3631b:mirbase
Length = 164
Score = 115 bits (58), Expect = 2e-26
Identities = 94/106 (88%)
Strand = Plus / Minus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagttg 132
|||||||||||| |||||||||||||| ||| |||| ||||||||||||||||| |||
Sbjct: 131 taaaagtaacttattgacatcatccaacatagctaaaatgaacttgttatcaataggttc 72
Query: 133 agtttagttatattgaattatgtcaataggttacttttaactgaat 178
||||||||||||||| || ||||||| | |||||||||| ||||||
Sbjct: 71 agtttagttatattggatgatgtcaacatgttacttttagctgaat 26
Score = 77.8 bits (39), Expect = 4e-15
Identities = 87/103 (84%)
Strand = Plus / Plus
Query: 72 ctaaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagtt 131
||||||||||| ||||||||||||||||||||| |||| ||||| | || || |||||
Sbjct: 32 ctaaaagtaacatgttgacatcatccaatataactaaactgaacctattgataacaagtt 91
Query: 132 gagtttagttatattgaattatgtcaataggttacttttaact 174
| ||||| ||| ||| || ||||||||| |||||||||||||
Sbjct: 92 cattttagctatgttggatgatgtcaataagttacttttaact 134
>41713_vvi-MIR3631d:mirbase
Length = 250
Score = 69.9 bits (35), Expect = 9e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaac 115
|||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 156 taaaagtaacatgttgacatcatccaatataattaaactgaac 198
Score = 63.9 bits (32), Expect = 5e-11
Identities = 92/110 (83%), Gaps = 4/110 (3%)
Strand = Plus / Plus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaa-gtgaacttgttat---caataa 128
|||||||||| | || | |||| |||| ||||||||| ||||||||||||| ||||||
Sbjct: 1 taaaagtaacctattaatatcaaccaacataattaaaagtgaacttgttattatcaataa 60
Query: 129 gttgagtttagttatattgaattatgtcaataggttacttttaactgaat 178
||| |||||||||||||| | | || | |||| |||||||||||| ||||
Sbjct: 61 gtttagtttagttatatttattgatattaataagttacttttaacggaat 110
Score = 58.0 bits (29), Expect = 3e-09
Identities = 87/106 (82%), Gaps = 4/106 (3%)
Strand = Plus / Minus
Query: 73 taaaagtaacttgttgacatcatccaatataattaaagtgaacttgttatcaataagttg 132
||||||||| | |||| || |||||| ||||||||| |||||||||| ||| |||
Sbjct: 250 taaaagtaatctattgatattatccaacataattaaaatgaacttgtt----atatgttc 195
Query: 133 agtttagttatattgaattatgtcaataggttacttttaactgaat 178
|||||| |||||||| || ||||||| | |||||||||| ||||||
Sbjct: 194 agtttaattatattggatgatgtcaacatgttacttttatctgaat 149
