miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40945_mtr-MIR2652l:mirbase
Length = 225
Score = 79.8 bits (40), Expect = 7e-16
Identities = 43/44 (97%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 224 ggttatggtgcataaggaaatccttatgcaccctgcataaatcc 181
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatc 55
||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 3 ggttatgatgcataaggaaatctttatgcactctgcataaatc 45
>40942_mtr-MIR2652i:mirbase
Length = 235
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 234 ggttatggtgcataaggaaatccttatgcaccctgcataaat 193
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 3 ggttatggtgcataagaaaatccttatgcaccctgcataaatcc 46
>40938_mtr-MIR2652e:mirbase
Length = 247
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 15 ttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaatccttatgcaccctgcataaatcc 46
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatc 55
|||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 246 ggttatggtgcataagaaaatccttatgcaccctgcataaatc 204
>40935_mtr-MIR2652b:mirbase
Length = 235
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 234 ggttatggtgcataaggaaatccttatgcaccctgcataaat 193
Score = 71.9 bits (36), Expect = 2e-13
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 3 ggttatggtgcataaggaaatctttatgcaccctgcataaatcc 46
>40934_mtr-MIR2652a:mirbase
Length = 247
Score = 75.8 bits (38), Expect = 1e-14
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 15 ttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||||||||||||||||| |||||||||||
Sbjct: 244 ttatggtgcataaggaaatccttatgcaccctgcataaatcc 203
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 15 ttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 5 ttatggtgcataaggaaattcttatgcaccctgcataaatcc 46
>40944_mtr-MIR2652k:mirbase
Length = 232
Score = 71.9 bits (36), Expect = 2e-13
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 16 tatggtgcataaggaaatccttatgcaccgtgcataaatc 55
||||||||||||||||||||||||||||| ||||||||||
Sbjct: 228 tatggtgcataaggaaatccttatgcaccctgcataaatc 189
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gtgcataaggaaatccttatgcac 43
||||||||||||||||||||||||
Sbjct: 8 gtgcataaggaaatccttatgcac 31
>40940_mtr-MIR2652g:mirbase
Length = 234
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 233 ggttatggtgcataagaaaatccttatgcaccctgcataaat 192
Score = 65.9 bits (33), Expect = 1e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 12 tggttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct: 1 tggttacggtgcataaggaaattcttatgcaccctgcataaatcc 45
>40937_mtr-MIR2652d:mirbase
Length = 227
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 20 gtgcataaggaaatccttatgcaccgtgcataaatcc 56
||||||||||||||||||||||||| |||||||||||
Sbjct: 10 gtgcataaggaaatccttatgcaccctgcataaatcc 46
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 226 ggttatggtgtataacgaaatccttatgcaccctgcataaat 185
>40936_mtr-MIR2652c:mirbase
Length = 227
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 20 gtgcataaggaaatccttatgcaccgtgcataaatcc 56
||||||||||||||||||||||||| |||||||||||
Sbjct: 219 gtgcataaggaaatccttatgcaccctgcataaatcc 183
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||| |||| |||||||||||||||| |||||||||
Sbjct: 3 ggttatggtgtataacgaaatccttatgcaccctgcataaat 44
>40943_mtr-MIR2652j:mirbase
Length = 226
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 21 tgcataaggaaatccttatgcaccgtgcataaatcc 56
|||||||||||||||||||||||| |||||||||||
Sbjct: 217 tgcataaggaaatccttatgcaccctgcataaatcc 182
>40941_mtr-MIR2652h:mirbase
Length = 248
Score = 63.9 bits (32), Expect = 4e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaatcc 56
||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 246 ggttatggtgcataaggaa-tccttatgcaccctgcataaatcc 204
Score = 60.0 bits (30), Expect = 6e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 13 ggttatggtgcataaggaaatccttatgcaccgtgcataaat 54
|||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 4 ggttatggtgtataaggaaatctttatgcaccctgcataaat 45
>40939_mtr-MIR2652f:mirbase
Length = 186
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 31 aatccttatgcaccgtgcataaatccca 58
|||||||||||||| |||||||||||||
Sbjct: 184 aatccttatgcaccctgcataaatccca 157
