miRNEST 2.0, an integrative microRNA resource :: BLAST
>42600_sbi-MIR408:mirbase
Length = 205
Score = 391 bits (197), Expect = e-109
Identities = 203/205 (99%)
Strand = Plus / Plus
Query: 44 acagggacgatgcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 103
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
Query: 104 gcttgcccacaaaatggagggacttgtcaggagaggtatcaagcagagagaaggtgcctc 163
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61 gcttgcccacaaaatggagggacttgtcaggagaggtatcaggcagagagaaggtgcctc 120
Query: 164 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctggtgaaatggtgatggcctgagagagctcagctggtgtcctggtgttgttgcttcct 180
Query: 224 cccctgcactgcctcttccctggct 248
|||||||||||||||||||||||||
Sbjct: 181 cccctgcactgcctcttccctggct 205
>42464_sof-MIR408c:mirbase
Length = 286
Score = 147 bits (74), Expect = 6e-36
Identities = 112/127 (88%), Gaps = 12/127 (9%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 279
Query: 260 accttgc 266
||||||
Sbjct: 280 cccttgc 286
Score = 79.8 bits (40), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatggggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>42463_sof-MIR408b:mirbase
Length = 286
Score = 147 bits (74), Expect = 6e-36
Identities = 112/127 (88%), Gaps = 12/127 (9%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagagggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 279
Query: 260 accttgc 266
||||||
Sbjct: 280 cccttgc 286
Score = 79.8 bits (40), Expect = 1e-15
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatggggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>42465_sof-MIR408d:mirbase
Length = 215
Score = 133 bits (67), Expect = 8e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 188 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 247
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 137 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 196
Query: 248 tccccaccgtcgaccttgc 266
|||||||||| | ||||||
Sbjct: 197 tccccaccgttgcccttgc 215
Score = 127 bits (64), Expect = 5e-30
Identities = 81/86 (94%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 32 gtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaatttc 91
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 10 gtttgattggagacagggacgaggcagagcatgggatggggccat---caacaaaatttc 66
Query: 92 caatttccgtttgcttgcccacaaaa 117
|||||||||||||||||| |||||||
Sbjct: 67 caatttccgtttgcttgctcacaaaa 92
>42462_sof-MIR408a:mirbase
Length = 283
Score = 119 bits (60), Expect = 1e-27
Identities = 109/127 (85%), Gaps = 15/127 (11%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 220 ggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggctccccaccgttg 276
Query: 260 accttgc 266
||||||
Sbjct: 277 cccttgc 283
Score = 71.9 bits (36), Expect = 3e-13
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || ||||||||||||||| |||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatgaggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 115 bits (58), Expect = 2e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 188 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 247
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 119 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 178
Query: 248 tc 249
||
Sbjct: 179 tc 180
Score = 109 bits (55), Expect = 1e-24
Identities = 72/77 (93%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 41 gagacagggacgatgcagagcatgggatggggccatcaacaacaaaatttccaatttccg 100
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccg 57
Query: 101 tttgcttgcccacaaaa 117
||||||||| |||||||
Sbjct: 58 tttgcttgctcacaaaa 74
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 101 bits (51), Expect = 3e-22
Identities = 94/110 (85%), Gaps = 15/110 (13%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 142 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggctgagagctcagct 201
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctc 249
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtgtcctg---ttgttgcttcctcccctgcactgcctcttccctggctc 248
Score = 63.9 bits (32), Expect = 6e-11
Identities = 52/58 (89%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 41 gagacagggacgatgcagagcatgggatggggccatcaacaacaaaatttccaatttc 98
|||||||||| || ||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccat---caacaaaatttccaatttc 55
>42466_sof-MIR408e:mirbase
Length = 283
Score = 95.6 bits (48), Expect = 2e-20
Identities = 106/127 (83%), Gaps = 15/127 (11%)
Strand = Plus / Plus
Query: 152 agaaggtgcctccctggtgaaatggtgatggcctga------------gagagctcagct 199
||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 160 agaaggtgcctccctggtgaagtggtgatggcctgacctgagacggatgagagctcagct 219
Query: 200 ggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggctccccaccgtcg 259
||||||||| ||||||||| || |||||||||| |||||||||||||||||||||| |
Sbjct: 220 ggtgtcctg---ttgttgcttacttccctgcactgactcttccctggctccccaccgttg 276
Query: 260 accttgc 266
||||||
Sbjct: 277 cccttgc 283
Score = 71.9 bits (36), Expect = 3e-13
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 29 tgggtttgattggagacagggacgatgcagagcatgggatggggccatcaacaacaaaat 88
||||| || ||||||||||||| || ||||||||||||||| |||||| |||||||||
Sbjct: 7 tgggtatggttggagacagggatgaggcagagcatgggatgaggccat---caacaaaat 63
Query: 89 ttccaatttc 98
||||||||||
Sbjct: 64 ttccaatttc 73
>42052_osa-MIR408:mirbase
Length = 213
Score = 77.8 bits (39), Expect = 4e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 210 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 252
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 60.0 bits (30), Expect = 1e-09
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 40 ggagacagggacgatgcagagcatgggatggggccatcaaca 81
||||||||||| || ||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>42829_zma-MIR408:mirbase
Length = 191
Score = 75.8 bits (38), Expect = 2e-14
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 209 gtgttgttgcttcctcccctgcactgcctcttccctggctcc 250
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
Score = 65.9 bits (33), Expect = 2e-11
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 38 ttggagacagggacgatgcagagcatgggatggggccatcaacaa 82
||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaa 60
>42830_zma-MIR408b:mirbase
Length = 147
Score = 69.9 bits (35), Expect = 1e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 211 gttgttgcttcctcccctgcactgcctcttccctggctc 249
||||||||| |||||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 48.1 bits (24), Expect = 4e-06
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 43 gacagggacgatgcagagcatggg-atggggccatcaaca 81
||||||||||| |||||||||||| | |||||||||||||
Sbjct: 1 gacagggacgaggcagagcatgggtagggggccatcaaca 40
Score = 44.1 bits (22), Expect = 6e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 94 atttccgtttgcttgcccacaaaatggagggact 127
||||| ||||||| || |||||||||||||||||
Sbjct: 55 atttctgtttgctcgctcacaaaatggagggact 88
>42647_tae-MIR408:mirbase
Length = 187
Score = 61.9 bits (31), Expect = 3e-10
Identities = 41/43 (95%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 210 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 252
|||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
>41252_csi-MIR408:mirbase
Length = 153
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 220 tcctcccctgcactgcctcttccctggctc 249
||||||| ||||||||||||||||||||||
Sbjct: 113 tcctcccatgcactgcctcttccctggctc 142
>40391_rco-MIR408:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 1e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 224 cccctgcactgcctcttccctggct 248
|||||||||||||||||||||||||
Sbjct: 64 cccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctccc 251
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>39897_aly-MIR408:mirbase
Length = 211
Score = 48.1 bits (24), Expect = 4e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctccc 251
||||||||||||||||||||||||
Sbjct: 118 tgcactgcctcttccctggctccc 141
>41683_vvi-MIR408:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>40405_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggctc 249
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>41463_ptc-MIR408:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 228 tgcactgcctcttccctggct 248
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
