miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>35302_aga-mir-277:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  gttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgaggtatttgta 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgaggtatttgta 60

                                         
Query: 71  aatgcactatctggtacgacattccagaat 100
           ||||||||||||||||||||||||||||||
Sbjct: 61  aatgcactatctggtacgacattccagaat 90




>36035_cqu-mir-277:mirbase
          Length = 96

 Score = 85.7 bits (43), Expect = 6e-18
 Identities = 82/94 (87%), Gaps = 2/94 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  agttttggggtacgtgtcagaggtgcatttacatcgaactattccagttgag--gtattt 67
           |||||||| || ||||||||| |||||||||||| |   | |||| ||| ||  ||||||
Sbjct: 2   agttttggagtgcgtgtcagaagtgcatttacataggtattttcccgtttagcagtattt 61

                                             
Query: 68  gtaaatgcactatctggtacgacattccagaatc 101
           ||||||||||||||||||||||||||||||||||
Sbjct: 62  gtaaatgcactatctggtacgacattccagaatc 95




>35207_aae-mir-277:mirbase
          Length = 95

 Score = 79.8 bits (40), Expect = 4e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                   
Query: 62  gtatttgtaaatgcactatctggtacgacattccagaatc 101
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gtatttgtaaatgcactatctggtacgacattccagaatc 94




>36119_dan-mir-277:mirbase
          Length = 98

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89




>36286_dgr-mir-277:mirbase
          Length = 89

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 53 ttgtaaatgcactatctggtacgacattccagaa 86




>36794_dmo-mir-277:mirbase
          Length = 88

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 52 ttgtaaatgcactatctggtacgacattccagaa 85




>36871_dpe-mir-277:mirbase
          Length = 98

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89




>36951_dps-mir-277:mirbase
          Length = 100

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtaaatgcactatctggtacgacattccagaa 89




>37371_dvi-mir-277:mirbase
          Length = 89

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 53 ttgtaaatgcactatctggtacgacattccagaa 86




>37450_dwi-mir-277:mirbase
          Length = 99

 Score = 67.9 bits (34), Expect = 1e-12
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 66 ttgtaaatgcactatctggtacgacattccagaa 99
          ||||||||||||||||||||||||||||||||||
Sbjct: 57 ttgtaaatgcactatctggtacgacattccagaa 90




>36197_der-mir-277:mirbase
          Length = 98

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>36417_dme-mir-277:mirbase
          Length = 100

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>36418_dme-mir-277:mirbase
          Length = 100

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>37157_dse-mir-277:mirbase
          Length = 98

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>37526_dya-mir-277:mirbase
          Length = 98

 Score = 65.9 bits (33), Expect = 6e-12
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||||||||||||||||||||||||||
Sbjct: 57 tgtaaatgcactatctggtacgacattccagaa 89




>35381_ame-mir-277:mirbase
          Length = 84

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 67 tgtaaatgcactatctggtacgacat 92
          ||||||||||||||||||||||||||
Sbjct: 49 tgtaaatgcactatctggtacgacat 74




>35550_bmo-mir-277:mirbase
          Length = 122

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 67  tgtaaatgcactatctggtacgacat 92
           ||||||||||||||||||||||||||
Sbjct: 79  tgtaaatgcactatctggtacgacat 104




>37588_ngi-mir-277:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 67 tgtaaatgcactatctggtacgacat 92
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>37619_nlo-mir-277:mirbase
          Length = 85

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 67 tgtaaatgcactatctggtacgacat 92
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>37661_nvi-mir-277:mirbase
          Length = 87

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 67 tgtaaatgcactatctggtacgacat 92
          ||||||||||||||||||||||||||
Sbjct: 52 tgtaaatgcactatctggtacgacat 77




>35077_api-mir-277:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 67 tgtaaatgcactatctggtacgaca 91
          |||||||||||||||||||||||||
Sbjct: 55 tgtaaatgcactatctggtacgaca 79




>37235_dsi-mir-277:mirbase
          Length = 98

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                           
Query: 67 tgtaaatgcactatctggtacgacattccagaa 99
          |||||||||| ||| ||||||||||||||||||
Sbjct: 57 tgtaaatgcattatttggtacgacattccagaa 89




>37769_tca-mir-277:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 67 tgtaaatgcactatctggtacgaca 91
          |||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75




>37770_tca-mir-277:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 67 tgtaaatgcactatctggtacgaca 91
          |||||||||||||||||||||||||
Sbjct: 51 tgtaaatgcactatctggtacgaca 75