miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35001_dpu-mir-10:mirbase
Length = 101
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 1 cccacacgaacctctctagaaccgaatttgtcttgtgatgcaactacaaattcggatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 cccacacgaacctctctagaaccgaatttgtcttgtgatgcaactacaaattcggatcta 27
Query: 61 cagggtagatgtag 74
||||||||||||||
Sbjct: 26 cagggtagatgtag 13
>37604_nlo-mir-10:mirbase
Length = 100
Score = 69.9 bits (35), Expect = 2e-13
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtcttgtga-tgcaactacaaattcggatcta 60
|||||| |||||||||||||||||||||||| ||| | ||| |||||||||||||||
Sbjct: 85 ccacacaaacctctctagaaccgaatttgtcgcctgacttcaa--acaaattcggatcta 28
Query: 61 cagggtagatgtag 74
||||||||||||||
Sbjct: 27 cagggtagatgtag 14
>37637_nvi-mir-10:mirbase
Length = 100
Score = 69.9 bits (35), Expect = 2e-13
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtcttgtga-tgcaactacaaattcggatcta 60
|||||| |||||||||||||||||||||||| ||| | ||| |||||||||||||||
Sbjct: 85 ccacacaaacctctctagaaccgaatttgtcgcctgacttcaa--acaaattcggatcta 28
Query: 61 cagggtagatgtag 74
||||||||||||||
Sbjct: 27 cagggtagatgtag 14
>37705_tca-mir-10:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtcttgtgatg-caactacaaattcggatctacagggta 67
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 67 aacctctctagaaccgaatttgtcgcctgatttcaa--acaaattcggatctacagggta 10
Query: 68 gatgtag 74
|||||||
Sbjct: 9 gatgtag 3
>37706_tca-mir-10:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/67 (89%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtcttgtgatg-caactacaaattcggatctacagggta 67
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 67 aacctctctagaaccgaatttgtcgcctgatttcaa--acaaattcggatctacagggta 10
Query: 68 gatgtag 74
|||||||
Sbjct: 9 gatgtag 3
>35050_api-mir-10:mirbase
Length = 83
Score = 61.9 bits (31), Expect = 6e-11
Identities = 65/74 (87%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtctt-gtgatgcaactacaaattcggatcta 60
|||||| |||||||||||||||||||||||| || | ||| |||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtcgccgtttttcaa--acaaattcggatcta 20
Query: 61 cagggtagatgtag 74
||||||||||||||
Sbjct: 19 cagggtagatgtag 6
>35523_bmo-mir-10:mirbase
Length = 84
Score = 61.9 bits (31), Expect = 6e-11
Identities = 65/74 (87%), Gaps = 3/74 (4%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtcttgtga-tgcaactacaaattcggatcta 60
|||||| |||||||||||||||||||||||| | | | ||| |||||||||||||||
Sbjct: 78 ccacacaaacctctctagaaccgaatttgtcgcctcacttcaa--acaaattcggatcta 21
Query: 61 cagggtagatgtag 74
||||||||||||||
Sbjct: 20 cagggtagatgtag 7
>36008_cqu-mir-10:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 69/79 (87%), Gaps = 7/79 (8%)
Strand = Plus / Minus
Query: 1 cccacacgaacctctctagaaccgaatttgtc--ttgtg---atgcaactacaaattcgg 55
||||||| |||||||||||||||||||||||| |||| || ||| ||||||||||
Sbjct: 81 cccacacaaacctctctagaaccgaatttgtcgcttgtttatattcaa--acaaattcgg 24
Query: 56 atctacagggtagatgtag 74
|||||||||||||||||||
Sbjct: 23 atctacagggtagatgtag 5
>34964_isc-mir-10:mirbase
Length = 73
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtagatgtag 1
>35177_aae-mir-10:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||||||||
Sbjct: 35 acaaattcggatctacagggtagatgtag 7
>35348_ame-mir-10-1:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||||||||
Sbjct: 42 acaaattcggatctacagggtagatgtag 14
>35349_ame-mir-10-2:mirbase
Length = 100
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||||||||
Sbjct: 42 acaaattcggatctacagggtagatgtag 14
>35278_aga-mir-10:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 cccacacgaacctctctagaaccgaatttgt 31
||||||| |||||||||||||||||||||||
Sbjct: 90 cccacacaaacctctctagaaccgaatttgt 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
||||||||||||||||||||| |||||||
Sbjct: 42 acaaattcggatctacagggtggatgtag 14
>36091_dan-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>36169_der-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||| ||||
Sbjct: 29 acaaattcggatctacagggtagacgtag 1
>36257_dgr-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>36353_dme-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>36354_dme-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>36840_dpe-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>36916_dps-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>37129_dse-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>37205_dsi-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>37498_dya-mir-10:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 2 ccacacgaacctctctagaaccgaatttgtc 32
|||||| ||||||||||||||||||||||||
Sbjct: 77 ccacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>37420_dwi-mir-10:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||| ||||
Sbjct: 29 acaaattcggatctacagggtagacgtag 1
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 71 aacctctctagaaccgaatttgtc 48
>34809_spu-mir-10:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgta 73
||||||||||||||||||||| ||||||
Sbjct: 47 acaaattcggatctacagggttgatgta 20
>34866_sko-mir-10:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 41 acaaattcggatctacagggtaga 18
>36767_dmo-mir-10:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 70 aacctctctagaaccgaatttgtc 47
>37343_dvi-mir-10:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 70 aacctctctagaaccgaatttgtc 47
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggt 66
|||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggt 9
>37563_lmi-mir-10:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 58 aacctctctagaaccgaatttgtc 35
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 22 acaaattcggatctacagggta 1
>38853_lgi-mir-10:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 42 acaaattcggatctacagggta 21
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>25889_gga-mir-10a:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>26621_cfa-mir-10:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 22 acaaattcggatctacagggta 1
>26943_eca-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 36 acaaattcggatctacagggta 15
>27477_age-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>27587_sla-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>27648_mml-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 42 acaaattcggatctacagggta 21
>31423_oan-mir-10a:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 49 acaaattcggatctacagggta 28
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>32655_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>32656_rno-mir-10a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>33126_bta-mir-10a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 43 acaaattcggatctacagggta 22
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 30 acaaattcggatctacagggta 9
>34197_dre-mir-10a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 39 acaaattcggatctacagggta 18
>34543_fru-mir-10c:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagat 70
|||||| ||||||||||||||||||
Sbjct: 36 acaaatccggatctacagggtagat 12
>34691_tni-mir-10c:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagat 70
|||||| ||||||||||||||||||
Sbjct: 42 acaaatccggatctacagggtagat 18
