miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26478_tgu-mir-147:mirbase
Length = 70
Score = 139 bits (70), Expect = 4e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 19 tagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgc 60
Query: 79 tacattttta 88
||||||||||
Sbjct: 61 tacattttta 70
>25969_gga-mir-147-1:mirbase
Length = 70
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>25970_gga-mir-147-2:mirbase
Length = 70
Score = 131 bits (66), Expect = 1e-31
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>27396_mdo-mir-147b:mirbase
Length = 82
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 10 ctatgaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaa 69
||||||||||||||||| ||| || ||||||||| ||||||||||| ||||||||||||
Sbjct: 2 ctatgaatctagtggaaacatctccgcacaaactagactactgaaaccagtgtgcggaag 61
Query: 70 tgcttctgctacatttttagg 90
|||||||||||||||||||||
Sbjct: 62 tgcttctgctacatttttagg 82
>26722_cfa-mir-147:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 4e-22
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 10 ctatgaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaa 69
||||||||||||||||| |||| ||||||||||| || || || | |||||||||||||
Sbjct: 4 ctatgaatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaa 63
Query: 70 tgcttctgctacatttttaggg 91
||||||||||||||||||||||
Sbjct: 64 tgcttctgctacatttttaggg 85
>28470_hsa-mir-147b:mirbase
Length = 80
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| |||||||||||||||| || | || | ||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
Query: 75 ctgctacatttttagg 90
||||||||||||||||
Sbjct: 65 ctgctacatttttagg 80
>30241_ptr-mir-147b:mirbase
Length = 79
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| |||||||||||||||| || | || | ||||||||||||||||||
Sbjct: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
Query: 75 ctgctacatttttagg 90
||||||||||||||||
Sbjct: 64 ctgctacatttttagg 79
>30854_ppy-mir-147b:mirbase
Length = 80
Score = 87.7 bits (44), Expect = 1e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| |||||||||||||||| || | || | ||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
Query: 75 ctgctacatttttagg 90
||||||||||||||||
Sbjct: 65 ctgctacatttttagg 80
>31881_mmu-mir-147:mirbase
Length = 79
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 tatgaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaat 70
|||||||||||||||| |||||||||||||||| || | ||| ||||||||||||||
Sbjct: 1 tatgaatctagtggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaat 59
Query: 71 gcttctgctacatttttagg 90
||||||||||||||| ||||
Sbjct: 60 gcttctgctacatttgtagg 79
>32754_rno-mir-147:mirbase
Length = 79
Score = 79.8 bits (40), Expect = 3e-16
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 11 tatgaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaat 70
|||||||||||||||| || ||||||||||||| || | ||| ||||||||||||||
Sbjct: 1 tatgaatctagtggaaacacttctgcacaaactcgattt-tgatgccagtgtgcggaaat 59
Query: 71 gcttctgctacatttttagg 90
||||||||||||||||||||
Sbjct: 60 gcttctgctacatttttagg 79
>33234_bta-mir-147:mirbase
Length = 80
Score = 79.8 bits (40), Expect = 3e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 11 tatgaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaat 70
|||||||||||||||| || ||||||||| || || || || | ||||||||||||||
Sbjct: 1 tatgaatctagtggaaacacttctgcacaggctagattatggataccagtgtgcggaaat 60
Query: 71 gcttctgctacatttttagg 90
||||||||||||||||||||
Sbjct: 61 gcttctgctacatttttagg 80
>27049_eca-mir-147b:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 8e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 31 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatttttagg 90
||||||||||||| || || || |||||||||| |||||||||||||||||||||||||
Sbjct: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatttttagg 80
>27755_mml-mir-147b:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/76 (85%)
Strand = Plus / Plus
Query: 15 aatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 74
|||||||||||| |||||| ||||||||| || | || | |||||||||||| |||||
Sbjct: 5 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 64
Query: 75 ctgctacatttttagg 90
||||| ||||||||||
Sbjct: 65 ctgctgcatttttagg 80
>27754_mml-mir-147a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgctacatt 84
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>28217_mne-mir-147:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgctacatt 84
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>27619_sla-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgctacatt 84
||||||| |||||||||||||| |||||
Sbjct: 45 cagtgtgtggaaatgcttctgccacatt 72
>28469_hsa-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgcta 80
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30100_ppa-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgcta 80
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30240_ptr-mir-147a:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgcta 80
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30853_ppy-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaaatgcttctgcta 80
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>31505_oan-mir-147:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 69/84 (82%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 14 gaatctagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgct 73
||||| || ||||||| |||||||||||| | || ||||| ||||||||||| |||||
Sbjct: 17 gaatccagcggaatcacctctgcacaaactcgtcttctgaac-cagtgtgcggagatgct 75
Query: 74 tctgctacatttttagggtctccc 97
|| || |||| | ||||||||||
Sbjct: 76 tccgccgcattctcagggtctccc 99
