miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34617_fru-mir-187:mirbase
          Length = 92

 Score =  119 bits (60), Expect = 4e-28
 Identities = 78/84 (92%)
 Strand = Plus / Plus

                                                                      
Query: 8  ttggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgt 67
          ||||| ||||||||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct: 9  ttggccgggccaggggctgcaacacaggacatgggtcatgcctctgcccaccgctcgtgt 68

                                  
Query: 68 cttgtgttgcagccagtggagctg 91
          ||||||||||||||||||||||||
Sbjct: 69 cttgtgttgcagccagtggagctg 92




>34337_dre-mir-187:mirbase
          Length = 89

 Score =  101 bits (51), Expect = 9e-23
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                      
Query: 9  tggctgggccaggggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtc 68
          ||||||||||||||||||||||||||||||||||  |||  ||||   ||||||||||||
Sbjct: 8  tggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgctcgtgtc 67

                             
Query: 69 ttgtgttgcagccagtgga 87
          |||||||||||||||||||
Sbjct: 68 ttgtgttgcagccagtgga 86




>34764_tni-mir-187:mirbase
          Length = 65

 Score = 89.7 bits (45), Expect = 4e-19
 Identities = 60/65 (92%)
 Strand = Plus / Plus

                                                                      
Query: 22 ggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtcttgtgttgcagcc 81
          ||||||||||||||||||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 1  ggctgcaacacaggacatgggtcttgcctctgcccgccgctcgtgtcttgtgttgcagcc 60

               
Query: 82 agtgg 86
          |||||
Sbjct: 61 agtgg 65




>25810_xtr-mir-187:mirbase
          Length = 82

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 61 ctcgtgtcttgtgttgcagccagtgg 86
          ||||||||||||||||||||||||||
Sbjct: 49 ctcgtgtcttgtgttgcagccagtgg 74




>31517_oan-mir-187:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 61 ctcgtgtcttgtgttgcagccagtggagc 89
          ||||||||||||||||||||||| |||||
Sbjct: 48 ctcgtgtcttgtgttgcagccagaggagc 76




>25980_gga-mir-187:mirbase
          Length = 86

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 ctcgtgtcttgtgttgcagccag 83
          |||||||||||||||||||||||
Sbjct: 55 ctcgtgtcttgtgttgcagccag 77




>26488_tgu-mir-187:mirbase
          Length = 70

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 ctcgtgtcttgtgttgcagccag 83
          |||||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagccag 62




>27410_mdo-mir-187:mirbase
          Length = 81

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 ctcgtgtcttgtgttgcagccag 83
          |||||||||||||||||||||||
Sbjct: 50 ctcgtgtcttgtgttgcagccag 72




>26742_cfa-mir-187:mirbase
          Length = 68

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 40 ctcgtgtcttgtgttgcagcc 60




>27067_eca-mir-187:mirbase
          Length = 61

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 39 ctcgtgtcttgtgttgcagcc 59




>27778_mml-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>28226_mne-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>28319_ggo-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>28494_hsa-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>30108_ppa-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>30876_ppy-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>31903_mmu-mir-187:mirbase
          Length = 61

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 39 ctcgtgtcttgtgttgcagcc 59




>32773_rno-mir-187:mirbase
          Length = 104

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagcc 85




>33255_bta-mir-187:mirbase
          Length = 109

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 70 ctcgtgtcttgtgttgcagcc 90




>34017_ssc-mir-187:mirbase
          Length = 78

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 61 ctcgtgtcttgtgttgcagcc 81
          |||||||||||||||||||||
Sbjct: 46 ctcgtgtcttgtgttgcagcc 66