miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31332_ppy-mir-1273:mirbase
Length = 103
Score = 149 bits (75), Expect = 5e-37
Identities = 84/87 (96%)
Strand = Plus / Plus
Query: 13 gagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgtgct 72
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9 gagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgcact 68
Query: 73 ccagcctgggtgacagagcgagactct 99
||||||||||||||||||| |||||||
Sbjct: 69 ccagcctgggtgacagagcaagactct 95
>29124_hsa-mir-1273:mirbase
Length = 103
Score = 109 bits (55), Expect = 4e-25
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 13 gagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgtgct 72
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct: 9 gagaattgcttgaacccgggtggtggaggttgcagtgagccaagattgcgccactgcact 68
Query: 73 ccagcctgggtgacagagcgagactct 99
|||||||||| |||| ||| |||||||
Sbjct: 69 ccagcctgggcgacaaagcaagactct 95
>29127_hsa-mir-1273e:mirbase
Length = 102
Score = 107 bits (54), Expect = 2e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 13 gagaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgtgct 72
||||||||||||||||| ||| ||||||| ||||||||||| ||||| |||||||| ||
Sbjct: 9 gagaattgcttgaacccaggaagtggaggctgcagtgagccgagatcgagccactgtact 68
Query: 73 ccagcctgggtgacagagcgagactc 98
||||||||||||||| ||||||||||
Sbjct: 69 ccagcctgggtgacacagcgagactc 94
>30688_ptr-mir-1273:mirbase
Length = 102
Score = 95.6 bits (48), Expect = 6e-21
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 16 aattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgtgctcca 75
||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 12 aattgcttgaacctgggtggtggaggttgcagtgagccaagattgcgccactgcactcca 71
Query: 76 gcctgggtgacagagcgagactct 99
||||||| |||| ||| |||||||
Sbjct: 72 gcctgggcgacaaagcaagactct 95
>29126_hsa-mir-1273d:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 6e-12
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 15 gaattgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactgtgctcc 74
|||| |||||||||| ||||| |||| ||||||||||||||||| ||||||| || |
Sbjct: 1 gaatcgcttgaacccatgaggttgaggctgcagtgagccaagatcgtgccactgcacttc 60
Query: 75 agcctgggtgaca 87
|||||||||||||
Sbjct: 61 agcctgggtgaca 73
>31147_ppy-mir-566:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 6e-12
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 1 gaggctgaggcag-agaattgcttgaacccgggaggtggaggttgcagtgagc 52
||||||| ||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 38 gaggctggggcagcagaattgcttgaacccgggaggcgaaggttgcagtgagc 90
>28878_hsa-mir-566:mirbase
Length = 94
Score = 58.0 bits (29), Expect = 1e-09
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 1 gaggctgaggcag-agaattgcttgaacccgggaggtggaggttgcagtgagc 52
||||||| ||||| ||||| |||||||||||||||| | ||||||||||||||
Sbjct: 42 gaggctggggcagcagaatcgcttgaacccgggaggcgaaggttgcagtgagc 94
>29659_hsa-mir-4459:mirbase
Length = 66
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 31 ggaggtggaggttgcagtgagccaagatc 59
|||||||||||||||||||||||||||||
Sbjct: 15 ggaggtggaggttgcagtgagccaagatc 43
>30505_ptr-mir-566:mirbase
Length = 93
Score = 58.0 bits (29), Expect = 1e-09
Identities = 48/53 (90%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 1 gaggctgaggcag-agaattgcttgaacccgggaggtggaggttgcagtgagc 52
||||||| ||||| ||||| |||||||||||||||| | ||||||||||||||
Sbjct: 41 gaggctggggcagcagaatcgcttgaacccgggaggcgaaggttgcagtgagc 93
>29128_hsa-mir-1273f:mirbase
Length = 99
Score = 56.0 bits (28), Expect = 5e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 17 attgcttgaacccgggaggtggaggttgcagtgagccaagatcacgccactg 68
||||||||| || ||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 11 attgcttgagcctgggagatggaggttgcagtgagctgagatcacgcaactg 62
