miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>31821_mmu-mir-92b:mirbase
          Length = 83

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 44 ccctcccaatattgcactcgtcccggcctcc 74
          |||| ||||||||||||||||||||||||||
Sbjct: 43 ccctgccaatattgcactcgtcccggcctcc 73




>32702_rno-mir-92b:mirbase
          Length = 83

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 44 ccctcccaatattgcactcgtcccggcctcc 74
          |||| ||||||||||||||||||||||||||
Sbjct: 43 ccctgccaatattgcactcgtcccggcctcc 73




>33180_bta-mir-92b:mirbase
          Length = 96

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 44 ccctcccaatattgcactcgtcccggcctcc 74
          |||| ||||||||||||||||||||||||||
Sbjct: 52 ccctgccaatattgcactcgtcccggcctcc 82




>33952_ssc-mir-92b:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 44 ccctcccaatattgcactcgtcccggcctcc 74
          |||| ||||||||||||||||||||||||||
Sbjct: 42 ccctgccaatattgcactcgtcccggcctcc 72




>33953_ssc-mir-92b:mirbase
          Length = 80

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 44 ccctcccaatattgcactcgtcccggcctcc 74
          |||| ||||||||||||||||||||||||||
Sbjct: 42 ccctgccaatattgcactcgtcccggcctcc 72




>34258_dre-mir-92b:mirbase
          Length = 82

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 49 ccaatattgcactcgtcccggcctccc 75
          |||||||||||||||||||||||||||
Sbjct: 52 ccaatattgcactcgtcccggcctccc 78




>25749_xtr-mir-92b:mirbase
          Length = 73

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 44 ccaatattgcactcgtcccggcctcc 69




>26668_cfa-mir-92b:mirbase
          Length = 63

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 38 ccaatattgcactcgtcccggcctcc 63




>26990_eca-mir-92b:mirbase
          Length = 75

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 45 ccaatattgcactcgtcccggcctcc 70




>27697_mml-mir-92b:mirbase
          Length = 96

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 57 ccaatattgcactcgtcccggcctcc 82




>28407_hsa-mir-92b:mirbase
          Length = 96

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 57 ccaatattgcactcgtcccggcctcc 82




>30797_ppy-mir-92b:mirbase
          Length = 96

 Score = 52.0 bits (26), Expect = 6e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 49 ccaatattgcactcgtcccggcctcc 74
          ||||||||||||||||||||||||||
Sbjct: 57 ccaatattgcactcgtcccggcctcc 82




>34875_sko-mir-92c:mirbase
          Length = 101

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 aatattgcactcgtcccggcct 72
          ||||||||||||||||||||||
Sbjct: 59 aatattgcactcgtcccggcct 80




>34949_xbo-mir-92a:mirbase
          Length = 82

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 51 aatattgcactcgtcccggcct 72
          ||||||||||||||||||||||
Sbjct: 48 aatattgcactcgtcccggcct 69




>34820_spu-mir-92c:mirbase
          Length = 101

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 atattgcactcgtcccggcct 72
          |||||||||||||||||||||
Sbjct: 60 atattgcactcgtcccggcct 80




>38110_bma-mir-92:mirbase
          Length = 105

 Score = 42.1 bits (21), Expect = 6e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 52 atattgcactcgtcccggcct 72
          |||||||||||||||||||||
Sbjct: 66 atattgcactcgtcccggcct 86




>25350_odi-mir-92a:mirbase
          Length = 101

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tattgcactcgtcccggcct 72
          ||||||||||||||||||||
Sbjct: 66 tattgcactcgtcccggcct 85




>25466_pma-mir-92a:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 53 tattgcactcgtcccggcct 72
          ||||||||||||||||||||
Sbjct: 49 tattgcactcgtcccggcct 68




>24669_bfl-mir-92b:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 54 attgcactcgtcccggcct 72
          |||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80




>34818_spu-mir-92a:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 50 caatattgcactcgtcccggcct 72
          |||||||||||| ||||||||||
Sbjct: 58 caatattgcacttgtcccggcct 80




>35008_dpu-mir-92:mirbase
          Length = 101

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 54 attgcactcgtcccggcct 72
          |||||||||||||||||||
Sbjct: 62 attgcactcgtcccggcct 80




>35363_ame-mir-92a:mirbase
          Length = 100

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 50 caatattgcactcgtcccggcct 72
          |||||||||||| ||||||||||
Sbjct: 60 caatattgcacttgtcccggcct 82




>37577_ngi-mir-92a:mirbase
          Length = 94

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 50 caatattgcactcgtcccggcct 72
          |||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76




>37609_nlo-mir-92a:mirbase
          Length = 93

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 50 caatattgcactcgtcccggcct 72
          |||||||||||| ||||||||||
Sbjct: 54 caatattgcacttgtcccggcct 76




>37647_nvi-mir-92a:mirbase
          Length = 98

 Score = 38.2 bits (19), Expect = 0.001
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 50 caatattgcactcgtcccggcct 72
          |||||||||||| ||||||||||
Sbjct: 59 caatattgcacttgtcccggcct 81