miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34644_fru-mir-219-2:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 5e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 ggagctgattgtccaaacgcaatttttgagtctgcctaatgctaatccaggagttgtgta 76
|||||||||||||||||||||||| ||| |||||||| || || |||||||||||| |
Sbjct: 3 ggagctgattgtccaaacgcaattcttgcgtctgcct-ttgtgaaaccaggagttgtgga 61
Query: 77 tggacatca 85
|||||||||
Sbjct: 62 tggacatca 70
>34792_tni-mir-219-2:mirbase
Length = 80
Score = 65.9 bits (33), Expect = 5e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 17 ggagctgattgtccaaacgcaatttttgagtctgcctaatgctaatccaggagttgtgta 76
|||||||||||||||||||||||| ||| |||||||| || || |||||||||||| |
Sbjct: 3 ggagctgattgtccaaacgcaattcttgcgtctgcct-ttgtgaaaccaggagttgtgga 61
Query: 77 tggacatca 85
|||||||||
Sbjct: 62 tggacatca 70
>34791_tni-mir-219-1:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 agctgattgtccaaacgcaatt 40
||||||||||||||||||||||
Sbjct: 14 agctgattgtccaaacgcaatt 35
>24698_bfl-mir-219:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 gctgattgtccaaacgcaatt 40
|||||||||||||||||||||
Sbjct: 6 gctgattgtccaaacgcaatt 26
>27433_mdo-mir-219:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 gctgattgtccaaacgcaatt 40
|||||||||||||||||||||
Sbjct: 14 gctgattgtccaaacgcaatt 34
>27816_mml-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>28335_ggo-mir-219:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>28538_hsa-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>28539_hsa-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>30296_ptr-mir-219-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 19 ctgattgtccaaacgcaattctcgagtct 47
>30297_ptr-mir-219-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 19 ctgattgtccaaacgcaattctcgagtct 47
>30914_ppy-mir-219:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>31540_oan-mir-219:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 gctgattgtccaaacgcaatt 40
|||||||||||||||||||||
Sbjct: 29 gctgattgtccaaacgcaatt 49
>31948_mmu-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>32813_rno-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>32814_rno-mir-219-1:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatttttgagtct 49
|||||||||||||||||||| | ||||||
Sbjct: 20 ctgattgtccaaacgcaattctcgagtct 48
>34380_dre-mir-219-3:mirbase
Length = 150
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 gctgattgtccaaacgcaatt 40
|||||||||||||||||||||
Sbjct: 47 gctgattgtccaaacgcaatt 67
>26009_gga-mir-219:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 9 ctgattgtccaaacgcaatt 28
>26355_gga-mir-2964:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 78 ctgattgtccaaacgcaatt 59
>26516_tgu-mir-219:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 10 ctgattgtccaaacgcaatt 29
>26565_tgu-mir-2964:mirbase
Length = 158
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 116 ctgattgtccaaacgcaatt 97
>26780_cfa-mir-219-1:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 tgattgtccaaacgcaatttttgagtct 49
||||||||||||||||||| | ||||||
Sbjct: 1 tgattgtccaaacgcaattctcgagtct 28
>27104_eca-mir-219:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 tgattgtccaaacgcaatttttgagtct 49
||||||||||||||||||| | ||||||
Sbjct: 14 tgattgtccaaacgcaattctcgagtct 41
>27105_eca-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>27817_mml-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>27818_mml-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>28540_hsa-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>28541_hsa-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>29224_hsa-mir-2964a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 77 ctgattgtccaaacgcaatt 58
>29225_hsa-mir-2964a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 77 ctgattgtccaaacgcaatt 58
>30298_ptr-mir-219-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>30299_ptr-mir-219-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>30915_ppy-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>31949_mmu-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>31950_mmu-mir-219-2:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>32815_rno-mir-219-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>32816_rno-mir-219-2:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>33020_rno-mir-2964:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 82 ctgattgtccaaacgcaatt 63
>33297_bta-mir-219-1:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>33298_bta-mir-219-1:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 18 ctgattgtccaaacgcaatt 37
>33299_bta-mir-219-2:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 12 ctgattgtccaaacgcaatt 31
>33300_bta-mir-219-2:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 12 ctgattgtccaaacgcaatt 31
>34045_ssc-mir-219:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 tgattgtccaaacgcaatttttgagtct 49
||||||||||||||||||| | ||||||
Sbjct: 11 tgattgtccaaacgcaattctcgagtct 38
>35016_dpu-mir-219:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 20 ctgattgtccaaacgcaatt 39
>35200_aae-mir-219:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 10 ctgattgtccaaacgcaatt 29
>35296_aga-mir-219:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 10 ctgattgtccaaacgcaatt 29
>37755_tca-mir-219:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 10 ctgattgtccaaacgcaatt 29
>37756_tca-mir-219:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ctgattgtccaaacgcaatt 40
||||||||||||||||||||
Sbjct: 10 ctgattgtccaaacgcaatt 29
