miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31476_oan-mir-106:mirbase
Length = 114
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 6 attgccgtggtaatgctagaagcgcttccattgcagtaggtacaagaagcta-ctgcact 64
|||||| ||||||||||||||| |||| ||||||||||||||| | |||||| |||||||
Sbjct: 101 attgccatggtaatgctagaagtgcttacattgcagtaggtactaaaagctacctgcact 42
Query: 65 gtaagcacttttgcacaacc 84
||||||||||||||||||||
Sbjct: 41 gtaagcacttttgcacaacc 22
>25935_gga-mir-106:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 58 ctgcactgtaagcacttttgcacaac 83
||||||||||||||||||||||||||
Sbjct: 32 ctgcactgtaagcacttttgcacaac 7
>26447_tgu-mir-106:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 58 ctgcactgtaagcacttttgcacaac 83
||||||||||||||||||||||||||
Sbjct: 29 ctgcactgtaagcacttttgcacaac 4
>27504_age-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>27613_sla-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>27711_mml-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>28205_mne-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>28297_ggo-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>28423_hsa-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttacattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>30084_ppa-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>30204_ptr-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>30811_ppy-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>33194_bta-mir-106:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>33965_ssc-mir-106a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 13 tggtaatgctagaagcgcttccattgcagtaggta-caagaagctac-tgcactgtaagc 70
|||||||| ||||| |||| ||||||||||| | ||| ||||||| ||||||||||||
Sbjct: 78 tggtaatgtaagaagtgcttgcattgcagtagatctcaaaaagctacctgcactgtaagc 19
Query: 71 actttt 76
||||||
Sbjct: 18 actttt 13
>32662_rno-mir-17-2:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 48 caagaagctac-tgcactgtaagcacttt 75
||||||||||| |||||||||||||||||
Sbjct: 40 caagaagctacctgcactgtaagcacttt 12
>32663_rno-mir-17-2:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 48 caagaagctac-tgcactgtaagcacttt 75
||||||||||| |||||||||||||||||
Sbjct: 40 caagaagctacctgcactgtaagcacttt 12
