miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>41419_ptc-MIR393c:mirbase
          Length = 107

 Score =  212 bits (107), Expect = 5e-56
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  gctggagtgttccaaagggatcgcattgatctaatgactctcgatgtctaaatcatatta 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gctggagtgttccaaagggatcgcattgatctaatgactctcgatgtctaaatcatatta 60

                                                          
Query: 72  atgtttagttttttcgttggatcatgcgatcccttaggaattttcca 118
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atgtttagttttttcgttggatcatgcgatcccttaggaattttcca 107




>41420_ptc-MIR393d:mirbase
          Length = 107

 Score =  145 bits (73), Expect = 9e-36
 Identities = 97/105 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  tggagtgttccaaagggatcgcattgatctaatgactctcgatgtctaaatcatattaat 73
           ||||||||||||||||||||||||||||||||||||| | |||||||| || || |||||
Sbjct: 3   tggagtgttccaaagggatcgcattgatctaatgacttttgatgtctatatgatgttaat 62

                                                        
Query: 74  gtttagttttttcgttggatcatgcgatcccttaggaattttcca 118
           |||||||  |||| |||||||||||||||||||||||||||||||
Sbjct: 63  gtttagtcatttcattggatcatgcgatcccttaggaattttcca 107




>40373_rco-MIR393:mirbase
          Length = 108

 Score = 56.0 bits (28), Expect = 7e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 20 gttccaaagggatcgcattgatctaatg 47
          ||||||||||||||||||||||||||||
Sbjct: 4  gttccaaagggatcgcattgatctaatg 31



 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 88  ttggatcatgcgatcccttaggaa 111
           ||||||||||||||||||||||||
Sbjct: 79  ttggatcatgcgatcccttaggaa 102




>41054_ghr-MIR393:mirbase
          Length = 139

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 88  ttggatcatgcgatcccttaggaattttcca 118
           ||||||||||||||||||| |||||||||||
Sbjct: 107 ttggatcatgcgatcccttcggaattttcca 137



 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 22 tccaaagggatcgcattgatctaatg 47
          ||||||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatctaatg 36




>41133_tcc-MIR393b:mirbase
          Length = 158

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                
Query: 9  gcagctggagtgttccaaagggatcgcattgatctaat 46
          |||| ||||| | |||||||||||||||||||||||||
Sbjct: 8  gcaggtggagagctccaaagggatcgcattgatctaat 45



 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 88  ttggatcatgcgatcccttaggaattttcca 118
           ||||||||||| ||||||| |||||||||||
Sbjct: 116 ttggatcatgcaatcccttcggaattttcca 146




>42788_zma-MIR393c:mirbase
          Length = 97

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 22 tccaaagggatcgcattgatctaa 45
          ||||||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatctaa 25




>42786_zma-MIR393a:mirbase
          Length = 126

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 tccaaagggatcgcattgatcta 44
          |||||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatcta 43




>41641_vvi-MIR393a:mirbase
          Length = 126

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 20 gttccaaagggatcgcattgatc 42
          |||||||||||||||||||||||
Sbjct: 9  gttccaaagggatcgcattgatc 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  ttggatcatgcgatcccttaggaa 111
           ||||||||||| ||||||||||||
Sbjct: 92  ttggatcatgctatcccttaggaa 115




>42567_sbi-MIR393b:mirbase
          Length = 84

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tccaaagggatcgcattgatct 43
          ||||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatct 22




>41999_osa-MIR393b:mirbase
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tccaaagggatcgcattgatct 43
          ||||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatct 48




>41998_osa-MIR393b:mirbase
          Length = 132

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tccaaagggatcgcattgatct 43
          ||||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatct 48




>41775_bdi-MIR393b:mirbase
          Length = 174

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 22 tccaaagggatcgcattgatct 43
          ||||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatct 63




>42787_zma-MIR393b:mirbase
          Length = 108

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 2  tccaaagggatcgcattgatc 22




>42566_sbi-MIR393:mirbase
          Length = 139

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 20 tccaaagggatcgcattgatc 40




>41997_osa-MIR393:mirbase
          Length = 115

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41774_bdi-MIR393a:mirbase
          Length = 159

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 36 tccaaagggatcgcattgatc 56




>41642_vvi-MIR393b:mirbase
          Length = 83

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41418_ptc-MIR393b:mirbase
          Length = 84

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41417_ptc-MIR393a:mirbase
          Length = 85

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>41238_csi-MIR393:mirbase
          Length = 145

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>41132_tcc-MIR393a:mirbase
          Length = 118

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>40707_mtr-MIR393b:mirbase
          Length = 119

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 6  tccaaagggatcgcattgatc 26




>40706_mtr-MIR393:mirbase
          Length = 135

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41




>40470_gma-MIR393:mirbase
          Length = 120

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>40295_bna-MIR393:mirbase
          Length = 127

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 1  tccaaagggatcgcattgatc 21




>40076_ath-MIR393b:mirbase
          Length = 160

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>40075_ath-MIR393a:mirbase
          Length = 133

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31




>39866_aly-MIR393b:mirbase
          Length = 169

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38




>39865_aly-MIR393a:mirbase
          Length = 147

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 22 tccaaagggatcgcattgatc 42
          |||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatc 38