miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51605_ptc-miR159d:pmrd
Length = 194
Score = 48.1 bits (24), Expect = 3e-06
Identities = 66/78 (84%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 127 cagcttaagggtttgcatgactcaggagacgt-gtttgccttctccattaaaccttactt 185
||||||||||||||||||| | ||||||||| | |||||||||| || | || |||
Sbjct: 111 cagcttaagggtttgcatggccaaggagacgttgcctgccttctccttt---cgtttctt 167
Query: 186 ggattgaagggagctcct 203
||||||||||||||||||
Sbjct: 168 ggattgaagggagctcct 185
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 75 ctgctggttcatggattcctctgagctgcgcaggata 111
||||| |||||||||| |||||| | |||||||||||
Sbjct: 59 ctgcttgttcatggatacctctgggttgcgcaggata 95
>55054_zma-miR319m:pmrd
Length = 178
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 158 cttggattgaagggagctcct 178
>54936_zma-miR159g:pmrd
Length = 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 159 cttggattgaagggagctcct 179
>54935_zma-miR159f:pmrd
Length = 181
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 160 cttggattgaagggagctcct 180
>54933_zma-miR159d:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcct 198
>54932_zma-miR159c:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcct 198
>54643_sof-miR319b:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 156 cttggattgaagggagctcct 176
>54630_sof-miR159c:pmrd
Length = 238
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 199 cttggattgaagggagctcct 219
>54403_sbi-miR159b:pmrd
Length = 253
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcct 203
|||||||||||||||||||||
Sbjct: 214 cttggattgaagggagctcct 234
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcc 202
||||||||||||||||||||
Sbjct: 249 cttggattgaagggagctcc 268
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183 cttggattgaagggagctcc 202
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcc 202
||||||||||||||||||||
Sbjct: 49 cttggattgaagggagctcc 68
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcc 202
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>51547_psi-miR159:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 cttggattgaagggagctcc 202
||||||||||||||||||||
Sbjct: 173 cttggattgaagggagctcc 192
>48823_osa-miR159e:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 ttggattgaagggagctcct 203
||||||||||||||||||||
Sbjct: 162 ttggattgaagggagctcct 181
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184 ttggattgaagggagctcct 203
||||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcct 215
