miRNEST 2.0, an integrative microRNA resource :: BLAST
>48680_lja-miR396:pmrd
Length = 108
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ctctttctgttcttccacagctttcttgaactgcat 45
|||||| | |||||||||||||||||||||||||||
Sbjct: 4 ctctttgtattcttccacagctttcttgaactgcat 39
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 tttgctgttcaataaagctgtgggaagata 100
||||| ||||||||||||||||||||||||
Sbjct: 70 tttgcggttcaataaagctgtgggaagata 99
>48578_gma-miR396a:pmrd
Length = 140
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 10 ctctttctgttcttccacagctttcttgaactgcat 45
|||||| | |||||||||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcat 44
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 71 tttgctgttcaataaagctgtgggaagatagagagaggatcaac 114
||||| |||||||||||||||||||||||| ||| ||| |||||
Sbjct: 97 tttgcggttcaataaagctgtgggaagatacagatagggtcaac 140
>55074_zma-miR396c:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcatg 46
|||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatg 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55073_zma-miR396b:pmrd
Length = 136
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tctttctgttcttccacagctttcttgaactgcat 45
||||| || ||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>55072_zma-miR396a:pmrd
Length = 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcatg 46
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54871_vvi-miR396d:pmrd
Length = 120
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgcat 45
|||||||||||||||||||||||||||
Sbjct: 8 ttcttccacagctttcttgaactgcat 34
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 ttgctgttcaataaagctgtgggaagata 100
|||| ||||||||||||||||||||||||
Sbjct: 85 ttgcggttcaataaagctgtgggaagata 113
>54645_sof-miR396:pmrd
Length = 134
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tctttctgttcttccacagctttcttgaactgcat 45
||||| || ||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 11 tctttctgttcttccacagctttcttgaactgcat 45
||||| || ||||||||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>54485_sbi-miR396a:pmrd
Length = 125
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcatg 46
|||||||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcatg 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>46887_aqc-miR396a:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgcatggt 48
|||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatggt 27
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 70 ctttgctgttcaataaagctgtgggaa 96
|||||| ||||||||||||||||||||
Sbjct: 95 ctttgcggttcaataaagctgtgggaa 121
>55079_zma-miR396h:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcat 45
||||||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||
Sbjct: 6 ttcttccacagctttcttgaactgca 31
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaagata 100
||||||||||||||||||||||||
Sbjct: 104 gttcaataaagctgtgggaagata 127
>51735_ptc-miR396b:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||
Sbjct: 8 ttcttccacagctttcttgaactgca 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaagata 100
||||||||||||||||||||||||
Sbjct: 106 gttcaataaagctgtgggaagata 129
>51734_ptc-miR396a:pmrd
Length = 123
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||
Sbjct: 8 ttcttccacagctttcttgaactgca 33
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 ttgctgttcaataaagctgtgggaagata 100
|||| ||||||||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtgggaagata 120
>48946_osa-miR396b:pmrd
Length = 116
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgcat 45
||||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcat 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||
Sbjct: 15 ttcttccacagctttcttgaactgca 40
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 tttgctgttcaataaagctgtgggaagata 100
||||| ||||||||||||||||||||||||
Sbjct: 124 tttgcggttcaataaagctgtgggaagata 153
>47008_ath-miR396a:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttcttccacagctttcttgaactgca 44
||||||||||||||||||||||||||
Sbjct: 8 ttcttccacagctttcttgaactgca 33
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 71 tttgctgttcaataaagctgtgggaagata 100
||||| ||||||||||||||||||||||||
Sbjct: 117 tttgcggttcaataaagctgtgggaagata 146
>55081_zma-miR396j:pmrd
Length = 98
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgcatg 46
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatg 25
>55080_zma-miR396i:pmrd
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgcatg 46
|||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatg 25
>48945_osa-miR396a:pmrd
Length = 154
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactgca 44
|||||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gttcaataaagctgtgggaa 96
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55083_zma-miR396l:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgcat 45
||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48485_gcl-miR396a:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaactgcat 45
||||||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcat 78
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 71 tttgctgttcaataaagctgtggga 95
||||| |||||||||||||||||||
Sbjct: 25 tttgcggttcaataaagctgtggga 1
>54870_vvi-miR396c:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tcttccacagctttcttgaactg 42
|||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactg 31
>48508_ghr-miR396c:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ttgctgttcaataaagctgtggga 95
|||| |||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgca 44
|||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgca 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 72 ttgctgttcaataaagctgtggga 95
|||| |||||||||||||||||||
Sbjct: 92 ttgcggttcaataaagctgtggga 115
>55082_zma-miR396k:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgc 43
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgc 22
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 17 tgttcttccacagctttcttgaact 41
|||| ||||||||||||||||||||
Sbjct: 98 tgtttttccacagctttcttgaact 74
>51736_ptc-miR396c:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgttcttccacagctttcttgaact 41
|||| ||||||||||||||||||||
Sbjct: 6 tgtttttccacagctttcttgaact 30
>48486_gcl-miR396b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 tttgctgttcaataaagctgtggga 95
||||| |||||||||||||||||||
Sbjct: 77 tttgcggttcaataaagctgtggga 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaactgcat 45
||||| ||||||||||||||||||
Sbjct: 1 ttccatagctttcttgaactgcat 24
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>54869_vvi-miR396b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaact 33
>54487_sbi-miR396c:pmrd
Length = 162
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 142 ttccacagctttcttgaact 123
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaact 115
>51738_ptc-miR396e:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51737_ptc-miR396d:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48947_osa-miR396c:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaact 25
>48580_gma-miR396c:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48579_gma-miR396b:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>47009_ath-miR396b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22 ttccacagctttcttgaact 41
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
