miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51762_ptc-miR408:pmrd
Length = 105
Score = 79.8 bits (40), Expect = 4e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||| ||||||||| ||| ||||| |||||||||||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 77
Query: 77 gcactgcctcttccctggct 96
||||||||||||||||||||
Sbjct: 78 gcactgcctcttccctggct 97
>54892_vvi-miR408:pmrd
Length = 107
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 58 ctgtttctgctctacccatgcactgcctcttccctggctct 98
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 73.8 bits (37), Expect = 2e-14
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||| ||||||||| ||| ||||| |||||||||||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 62
Query: 77 gcactgcctcttccctg 93
|||||||||||||||||
Sbjct: 63 gcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 63.9 bits (32), Expect = 2e-11
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||||| | ||||| ||| | ||||| |||| |||||
Sbjct: 13 gggaacaggcagagcatggatggaaccattaacaggttctc-tgttttggctcctcccat 71
Query: 77 gcactgcctcttccctggctctct 100
||||||||||||||||||||||||
Sbjct: 72 gcactgcctcttccctggctctct 95
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 67 ctctacccatgcactgcctcttccctggctc 97
|||||||||||||||||||||||||||||||
Sbjct: 34 ctctacccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 ctctacccatgcactgcctcttccctggctc 97
|||||||||||||||||||||||||||||||
Sbjct: 112 ctctacccatgcactgcctcttccctggctc 142
>54389_rco-miR408:pmrd
Length = 129
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 gctctacccatgcactgcctcttccctggct 96
||||||||| |||||||||||||||||||||
Sbjct: 81 gctctacccctgcactgcctcttccctggct 111
>51347_ppe-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 gctctacccatgcactgcctcttccctggct 96
||||||| |||||||||||||||||||||||
Sbjct: 66 gctctactcatgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 ccatgcactgcctcttccctggct 96
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>54649_sof-miR408d:pmrd
Length = 215
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 acccatgcactgcctcttccctggctc 97
|||| ||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctc 198
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 atgcactgcctcttccctggctc 97
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggct 96
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>55104_zma-miR408:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>54690_tae-miR408:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 atgcactgcctcttccctggct 96
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48975_osa-miR408:pmrd
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ccatgcactgcctcttccctgg 94
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggct 96
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
