miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51762_ptc-miR408:pmrd
          Length = 105

 Score = 54.0 bits (27), Expect = 3e-08
 Identities = 70/82 (85%), Gaps = 3/82 (3%)
 Strand = Plus / Plus

                                                                       
Query: 34  gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
           |||||||| |||||||||||| ||||| ||| ||||||   |||  |||||| | || ||
Sbjct: 18  gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 74

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 75  catgcactgcctcttccctggc 96




>53677_ptc-miRf11855-akr:pmrd
          Length = 79

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 68/80 (85%), Gaps = 3/80 (3%)
 Strand = Plus / Plus

                                                                       
Query: 34  gggaacagacagagcatggatagagcttacttacagaaacccttttgttttgacccttcc 93
           |||||||| |||||||||||| ||||| ||| ||||||   |||  |||||| | || ||
Sbjct: 3   gggaacaggcagagcatggatggagct-actaacagaagtactt--gttttggctctacc 59

                               
Query: 94  catgcactgcctcttccctg 113
           ||||||||||||||||||||
Sbjct: 60  catgcactgcctcttccctg 79




>48428_cpt-miR408:pmrd
          Length = 100

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||||||||||||||||||||||||
Sbjct: 66  tcccatgcactgcctcttccctggc 90




>48142_ath-miRf11042-akr:pmrd
          Length = 99

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||||||||||||||||||||||||
Sbjct: 42  tgttttgtctctacccatgcactgcctcttccctggc 6




>47031_ath-miR408:pmrd
          Length = 218

 Score = 50.1 bits (25), Expect = 5e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||||||||||||||||||||||||
Sbjct: 104 tgttttgtctctacccatgcactgcctcttccctggc 140




>54892_vvi-miR408:pmrd
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 92  cccatgcactgcctcttccctggc 115
           ||||||||||||||||||||||||
Sbjct: 74  cccatgcactgcctcttccctggc 97




>46892_aqc-miR408:pmrd
          Length = 87

 Score = 46.1 bits (23), Expect = 7e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 93  ccatgcactgcctcttccctggc 115
           |||||||||||||||||||||||
Sbjct: 24  ccatgcactgcctcttccctggc 2




>51397_ppt-miR408b:pmrd
          Length = 144

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 92  catgcactgcctcttccctggc 113




>51347_ppe-miR408:pmrd
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 94  catgcactgcctcttccctggc 115
           ||||||||||||||||||||||
Sbjct: 74  catgcactgcctcttccctggc 95




>48317_bdi-miR408:pmrd
          Length = 133

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 93  ccatgcactgcctcttccctgg 114
           ||||||||||||||||||||||
Sbjct: 67  ccatgcactgcctcttccctgg 88




>55104_zma-miR408:pmrd
          Length = 191

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 148 tcccctgcactgcctcttccctggc 172




>54648_sof-miR408c:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267




>54647_sof-miR408b:pmrd
          Length = 286

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 243 tcccctgcactgcctcttccctggc 267




>54646_sof-miR408a:pmrd
          Length = 283

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 240 tcccctgcactgcctcttccctggc 264




>54585_smo-miR408:pmrd
          Length = 109

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  atgcactgcctcttccctggc 115
           |||||||||||||||||||||
Sbjct: 76  atgcactgcctcttccctggc 96




>54499_sbi-miR408:pmrd
          Length = 205

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 180 tcccctgcactgcctcttccctggc 204




>54389_rco-miR408:pmrd
          Length = 129

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 79  tgttttgacccttcccatgcactgcctcttccctggc 115
           ||||||| | || ||| ||||||||||||||||||||
Sbjct: 74  tgttttggctctacccctgcactgcctcttccctggc 110




>51566_pta-miR408:pmrd
          Length = 86

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  atgcactgcctcttccctggc 115
           |||||||||||||||||||||
Sbjct: 64  atgcactgcctcttccctggc 84




>48975_osa-miR408:pmrd
          Length = 213

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 91  tcccatgcactgcctcttccctggc 115
           |||| ||||||||||||||||||||
Sbjct: 149 tcccctgcactgcctcttccctggc 173




>54690_tae-miR408:pmrd
          Length = 187

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgcactgcctcttccctggc 115
           ||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156




>54649_sof-miR408d:pmrd
          Length = 215

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 96  tgcactgcctcttccctggc 115
           ||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196