miRNEST 2.0, an integrative microRNA resource :: BLAST
>48423_cpa-miR162a:pmrd
Length = 109
Score = 93.7 bits (47), Expect = 3e-20
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Minus
Query: 27 cgctggatgcagaggtttatcgaccgattcttgttttgtgttcttccacagccaaattc- 85
||||||||||||||||||||||| |||||| |||| |||| | || |||| ||||||||
Sbjct: 102 cgctggatgcagaggtttatcgatcgattcatgttctgtgatttttcaca-ccaaattcc 44
Query: 86 -aggaagagatcgatgaaccgctgcgtccagcgacttt 122
|||||||||||||||||||||||| ||||| ||||||
Sbjct: 43 caggaagagatcgatgaaccgctgcctccagtgacttt 6
>54784_vvi-miR162:pmrd
Length = 103
Score = 85.7 bits (43), Expect = 8e-18
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 27 cgctggatgcagaggtttatcgaccgattcttgttttgtgttcttccacagccaaattca 86
||||||||||||||||||||||||||||||||| | || || || |||| ||| ||||
Sbjct: 95 cgctggatgcagaggtttatcgaccgattcttgatctg-cttttttcaca-acaatttca 38
Query: 87 ggaagagatcgatgaaccgctgcgtccagcgactt 121
||||||||||||||||||||||| ||||| |||||
Sbjct: 37 ggaagagatcgatgaaccgctgcatccagtgactt 3
>48493_ghr-miR162a:pmrd
Length = 148
Score = 85.7 bits (43), Expect = 8e-18
Identities = 84/94 (89%), Gaps = 4/94 (4%)
Strand = Plus / Minus
Query: 26 gcgctggatgcagaggtttatcgaccgattcttgt-tttgtgttcttc-cacagccaaat 83
|||||||||||||||||||||||| |||||| ||| |||||||| ||| |||| | ||||
Sbjct: 117 gcgctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaacaaaat 58
Query: 84 tc--aggaagagatcgatgaaccgctgcgtccag 115
|| |||||||||||||||||||||||| |||||
Sbjct: 57 tctcaggaagagatcgatgaaccgctgcctccag 24
>48682_llu-miR162:pmrd
Length = 80
Score = 65.9 bits (33), Expect = 8e-12
Identities = 73/87 (83%), Gaps = 7/87 (8%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattcttgttttgtgttcttccacagccaaattcagg 88
||||||||||||||||||||| |||||| || |||||||| || |||||||||
Sbjct: 80 ctggatgcagaggtttatcgatcgattcatggtttgtgttaatc-------aaattcagg 28
Query: 89 aagagatcgatgaaccgctgcgtccag 115
||||||||||| ||||||||| |||||
Sbjct: 27 aagagatcgataaaccgctgcttccag 1
>48545_gma-miR162a:pmrd
Length = 102
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 82 attcaggaagagatcgatgaaccgctgcgtccagcgactt 121
|||||||||||||||||||||||||||| ||||| |||||
Sbjct: 43 attcaggaagagatcgatgaaccgctgcatccagtgactt 4
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 85 caggaagagatcgatgaaccgctgcgtccagcgact 120
||||||||||||||||||||||||| ||||||||||
Sbjct: 55 caggaagagatcgatgaaccgctgcctccagcgact 20
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 27 cgctggatgcagaggtttatcga 49
|||||||||||||||||||||||
Sbjct: 111 cgctggatgcagaggtttatcga 89
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 25 agcgctggatgcagaggtttatcgaccgattcttg 59
||||||||||||||||||||||||| |||||||||
Sbjct: 11 agcgctggatgcagaggtttatcgatcgattcttg 45
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 93 gatcgatgaaccgctgcgtccagcgactt 121
||||||||||||||||| |||||||||||
Sbjct: 80 gatcgatgaaccgctgcctccagcgactt 108
>46938_ath-miR162b:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 25 agcgctggatgcagaggtttatcgaccgattcttg 59
||||||||||||||||||||||||| |||||||||
Sbjct: 103 agcgctggatgcagaggtttatcgatcgattcttg 69
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 93 gatcgatgaaccgctgcgtccagcgactt 121
||||||||||||||||| |||||||||||
Sbjct: 34 gatcgatgaaccgctgcctccagcgactt 6
>48707_mtr-miR162d:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattcttgttt 62
|||||||||||||||||||||||||||| |||||
Sbjct: 87 ctggatgcagaggtttatcgaccgattcatgttt 54
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 80 aaattcaggaagagatcgatgaaccgctgcgtccag 115
||||||||||| |||||||||||||||||| |||||
Sbjct: 36 aaattcaggaacagatcgatgaaccgctgcatccag 1
>48706_mtr-miR162c:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 30 tggatgcagaggtttatcgaccgattcttgttt 62
||||||||||||||||||||||||||| |||||
Sbjct: 1 tggatgcagaggtttatcgaccgattcatgttt 33
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 80 aaattcaggaagagatcgatgaaccgctgcgtccag 115
||||||||||| |||||||||||||||||| |||||
Sbjct: 51 aaattcaggaacagatcgatgaaccgctgcatccag 86
>48705_mtr-miR162b:pmrd
Length = 85
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 30 tggatgcagaggtttatcgaccgattcttgttt 62
||||||||||||||||||||||||||| |||||
Sbjct: 85 tggatgcagaggtttatcgaccgattcatgttt 53
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 80 aaattcaggaagagatcgatgaaccgctgcgtcca 114
||||||||||| |||||||||||||||||| ||||
Sbjct: 35 aaattcaggaacagatcgatgaaccgctgcatcca 1
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||||||||||||||||||||||
Sbjct: 130 ctggatgcagaggtttatcgaccgattc 103
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||||||||||||||||||||||
Sbjct: 99 ctggatgcagaggtttatcgaccgattc 72
>54387_rco-miR162:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 85 caggaagagatcgatgaaccgctgcgtccag 115
||||||||||||||||||||||||| |||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctccag 3
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 28 gctggatgcagaggtttatcgaccgattc 56
|||||||||||||||||||||| ||||||
Sbjct: 96 gctggatgcagaggtttatcgatcgattc 68
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 25 agcgctggatgcagaggtttatcgaccgattcttgtttt 63
||||||||||||||||||||||||| || ||| ||||||
Sbjct: 4 agcgctggatgcagaggtttatcgatcggttcatgtttt 42
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 caggaagagatcgatgaaccgctgcgtccag 115
||||||||||||||||||||||||| |||||
Sbjct: 65 caggaagagatcgatgaaccgctgcctccag 95
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 25 agcgctggatgcagaggtttatcgaccgattcttgtttt 63
||||||||||||||||||||||||| || ||| ||||||
Sbjct: 4 agcgctggatgcagaggtttatcgatcggttcatgtttt 42
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 85 caggaagagatcgatgaaccgctgcgtccag 115
||||||||||||||||||||||||| |||||
Sbjct: 65 caggaagagatcgatgaaccgctgcctccag 95
>51616_ptc-miR162a:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 85 caggaagagatcgatgaaccgctgcgtccag 115
||||||||||||||||||||||||| |||||
Sbjct: 41 caggaagagatcgatgaaccgctgcctccag 11
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 25 agcgctggatgcagaggtttatcgaccgattcttgtttt 63
||||||||||||||||||||||||| || ||| ||||||
Sbjct: 102 agcgctggatgcagaggtttatcgatcggttcatgtttt 64
>48685_lsa-miR162:pmrd
Length = 89
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 23 tgagcgctggatgcagaggtttatcga 49
|||||||||||||||||||||||||||
Sbjct: 27 tgagcgctggatgcagaggtttatcga 1
>48546_gma-miR162m:pmrd
Length = 367
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 23 tgagcgctggatgcagaggtttatcga 49
|||||||||||||||||||||||||||
Sbjct: 27 tgagcgctggatgcagaggtttatcga 1
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 62 ttcaggaaaagatcgatgaaccgctgcctccag 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 7 ctggatgcagaggtttatcga 27
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 64 ttcaggaaaagatcgatgaaccgctgcctccag 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 9 ctggatgcagaggtttatcga 29
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 64 ttcaggaaaagatcgatgaaccgctgcctccag 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 9 ctggatgcagaggtttatcga 29
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 62 ttcaggaaaagatcgatgaaccgctgcctccag 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 7 ctggatgcagaggtttatcga 27
>51618_ptc-miR162c:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 43 ttcaggaaaagatcgatgaaccgctgcctccag 11
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcga 78
>51617_ptc-miR162b:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 83 ttcaggaagagatcgatgaaccgctgcgtccag 115
|||||||| |||||||||||||||||| |||||
Sbjct: 43 ttcaggaaaagatcgatgaaccgctgcctccag 11
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcga 49
|||||||||||||||||||||
Sbjct: 98 ctggatgcagaggtttatcga 78
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||||||||||||||| ||||||
Sbjct: 163 ctggatgcagaggtttatcgatcgattc 136
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||| ||||||||||||||||||
Sbjct: 88 ctggatgcaaaggtttatcgaccgattc 61
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||||||| ||||||| ||||||
Sbjct: 114 ctggatgcagaggcttatcgatcgattc 87
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 29 ctggatgcagaggtttatcgaccgattc 56
||||||||||||| ||||||| ||||||
Sbjct: 124 ctggatgcagaggcttatcgatcgattc 97
