miRNEST 2.0, an integrative microRNA resource :: BLAST
>51347_ppe-miR408:pmrd
Length = 105
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 72 tgttgtggctctactcatgcactgcctcttccctggc 108
|||||||||||||||||||||||||||||||||||||
Sbjct: 59 tgttgtggctctactcatgcactgcctcttccctggc 95
>51762_ptc-miR408:pmrd
Length = 105
Score = 60.0 bits (30), Expect = 4e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 71 ttgttgtggctctactcatgcactgcctcttccctggc 108
||||| ||||||||| ||||||||||||||||||||||
Sbjct: 59 ttgttttggctctacccatgcactgcctcttccctggc 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcagagcatggatggagcta 40
||||||||||||||||||||||
Sbjct: 24 aggcagagcatggatggagcta 45
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 71 ttgttgtggctctactcatgcactgcctcttccctg 106
||||| ||||||||| ||||||||||||||||||||
Sbjct: 44 ttgttttggctctacccatgcactgcctcttccctg 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 aggcagagcatggatggagcta 40
||||||||||||||||||||||
Sbjct: 9 aggcagagcatggatggagcta 30
>54892_vvi-miR408:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 79 gctctactcatgcactgcctcttccctggc 108
||||||| ||||||||||||||||||||||
Sbjct: 68 gctctacccatgcactgcctcttccctggc 97
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 4e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 72 tgttgtggctctactcatgcactgcctcttccctggc 108
|||| ||||||||| | ||||||||||||||||||||
Sbjct: 74 tgttttggctctacccctgcactgcctcttccctggc 110
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 80 ctctactcatgcactgcctcttccctggc 108
|||||| ||||||||||||||||||||||
Sbjct: 34 ctctacccatgcactgcctcttccctggc 6
>47031_ath-miR408:pmrd
Length = 218
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 ctctactcatgcactgcctcttccctggc 108
|||||| ||||||||||||||||||||||
Sbjct: 112 ctctacccatgcactgcctcttccctggc 140
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 ctcatgcactgcctcttccctggc 108
||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggc 113
>48428_cpt-miR408:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 catgcactgcctcttccctggc 108
||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggc 90
>46892_aqc-miR408:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 catgcactgcctcttccctggc 108
||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggc 2
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 atgcactgcctcttccctggc 108
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 atgcactgcctcttccctggc 108
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>48584_gma-miR408a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 72 tgttgtggctctactcatgcactgcctcttccctggc 108
|||||||||| |||||||||||||| |||||||||
Sbjct: 84 tgttgtggctacgctcatgcactgcctgttccctggc 120
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 87 catgcactgcctcttccctgg 107
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172
>54690_tae-miR408:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>54649_sof-miR408d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196
>54648_sof-miR408c:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54647_sof-miR408b:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54646_sof-miR408a:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264
>54499_sbi-miR408:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204
>48975_osa-miR408:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 tgcactgcctcttccctggc 108
||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173
