miRNEST 2.0, an integrative microRNA resource :: BLAST
>48423_cpa-miR162a:pmrd
Length = 109
Score = 93.7 bits (47), Expect = 3e-20
Identities = 87/98 (88%), Gaps = 3/98 (3%)
Strand = Plus / Plus
Query: 24 aaagtcgctggacgcagcggttcatcgatctcttcct--gaatttggctgtggaagaaca 81
|||||| ||||| |||||||||||||||||||||||| |||||||| |||| || | ||
Sbjct: 6 aaagtcactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatca 64
Query: 82 caaaacaagaatcggtcgataaacctctgcatccagcg 119
|| |||| |||||| |||||||||||||||||||||||
Sbjct: 65 cagaacatgaatcgatcgataaacctctgcatccagcg 102
>54784_vvi-miR162:pmrd
Length = 103
Score = 85.7 bits (43), Expect = 8e-18
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 25 aagtcgctggacgcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaa 84
||||| ||||| ||||||||||||||||||||||||||| ||| |||| || || ||
Sbjct: 3 aagtcactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cag 60
Query: 85 aacaagaatcggtcgataaacctctgcatccagcg 119
| |||||||||||||||||||||||||||||||||
Sbjct: 61 atcaagaatcggtcgataaacctctgcatccagcg 95
>48493_ghr-miR162a:pmrd
Length = 148
Score = 85.7 bits (43), Expect = 8e-18
Identities = 84/94 (89%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcct--gaatttggctgtg-gaagaacacaaa-a 86
||||| |||||||||||||||||||||||| |||||| | |||| ||| |||||||| |
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaata 83
Query: 87 caagaatcggtcgataaacctctgcatccagcgc 120
|| |||||| ||||||||||||||||||||||||
Sbjct: 84 catgaatcgatcgataaacctctgcatccagcgc 117
>48682_llu-miR162:pmrd
Length = 80
Score = 65.9 bits (33), Expect = 8e-12
Identities = 73/87 (83%), Gaps = 7/87 (8%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaaacaag 90
||||| ||||||||| |||||||||||||||||||| || |||||||| || |
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctgaattt-------gattaacacaaaccatg 53
Query: 91 aatcggtcgataaacctctgcatccag 117
||||| |||||||||||||||||||||
Sbjct: 54 aatcgatcgataaacctctgcatccag 80
>48545_gma-miR162a:pmrd
Length = 102
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 25 aagtcgctggacgcagcggttcatcgatctcttcctgaat 64
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 4 aagtcactggatgcagcggttcatcgatctcttcctgaat 43
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 26 agtcgctggacgcagcggttcatcgatctcttcctg 61
|||||||||| |||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccagcg 119
|||||||||||||||||||||||
Sbjct: 89 tcgataaacctctgcatccagcg 111
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 87 caagaatcggtcgataaacctctgcatccagcgct 121
||||||||| |||||||||||||||||||||||||
Sbjct: 45 caagaatcgatcgataaacctctgcatccagcgct 11
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 25 aagtcgctggacgcagcggttcatcgatc 53
||||||||||| |||||||||||||||||
Sbjct: 108 aagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 caagaatcggtcgataaacctctgcatccagcgct 121
||||||||| |||||||||||||||||||||||||
Sbjct: 69 caagaatcgatcgataaacctctgcatccagcgct 103
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 25 aagtcgctggacgcagcggttcatcgatc 53
||||||||||| |||||||||||||||||
Sbjct: 6 aagtcgctggaggcagcggttcatcgatc 34
>48707_mtr-miR162d:pmrd
Length = 87
Score = 60.0 bits (30), Expect = 5e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 84 aaacaagaatcggtcgataaacctctgcatccag 117
||||| ||||||||||||||||||||||||||||
Sbjct: 54 aaacatgaatcggtcgataaacctctgcatccag 87
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaattt 66
||||| |||||||||||||||||| |||||||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctgaattt 36
>48706_mtr-miR162c:pmrd
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 84 aaacaagaatcggtcgataaacctctgcatcca 116
||||| |||||||||||||||||||||||||||
Sbjct: 33 aaacatgaatcggtcgataaacctctgcatcca 1
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaattt 66
||||| |||||||||||||||||| |||||||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctgaattt 51
>48705_mtr-miR162b:pmrd
Length = 85
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 84 aaacaagaatcggtcgataaacctctgcatcca 116
||||| |||||||||||||||||||||||||||
Sbjct: 53 aaacatgaatcggtcgataaacctctgcatcca 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 32 tggacgcagcggttcatcgatctcttcctgaattt 66
|||| |||||||||||||||||| |||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctgaattt 35
>54948_zma-miR162b:pmrd
Length = 130
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
||||||||||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
||||||||||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>54387_rco-miR162:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccagc 118
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 83 aaaacaagaatcggtcgataaacctctgcatccagcgct 121
|||||| ||| || |||||||||||||||||||||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgct 4
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 83 aaaacaagaatcggtcgataaacctctgcatccagcgct 121
|||||| ||| || |||||||||||||||||||||||||
Sbjct: 42 aaaacatgaaccgatcgataaacctctgcatccagcgct 4
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
>51616_ptc-miR162a:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctg 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 83 aaaacaagaatcggtcgataaacctctgcatccagcgct 121
|||||| ||| || |||||||||||||||||||||||||
Sbjct: 64 aaaacatgaaccgatcgataaacctctgcatccagcgct 102
>48685_lsa-miR162:pmrd
Length = 89
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccagcgctca 123
|||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctca 27
>48546_gma-miR162m:pmrd
Length = 367
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccagcgctca 123
|||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctca 27
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctgaa 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 29 tcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctgaa 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 27 tcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctgaa 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccag 117
|||||||||||||||||||||
Sbjct: 78 tcgataaacctctgcatccag 98
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||| |||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48690_mdo-miR162:pmrd
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||||||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||| ||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||| ||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
