miRNEST 2.0, an integrative microRNA resource :: BLAST
>54388_rco-miR168:pmrd
Length = 156
Score = 75.8 bits (38), Expect = 9e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 1 cggctgtctctaattcgcttggtgcaggtcgggaactgattagctt 46
|||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5 cggcggtctctaattcgcttggtgcaggtcgggaactgattggctt 50
Score = 69.9 bits (35), Expect = 6e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcggagaccg 163
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 110 gaattggatcccgccttgcatcaactgaatcgaagaccg 148
>51650_ptc-miR168a:pmrd
Length = 160
Score = 75.8 bits (38), Expect = 9e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 122 agcgaattggatcccgccttgcatcaactgaatcggag 159
||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agcgaattggatcccgccttgcatcaactgaatcggag 159
Score = 63.9 bits (32), Expect = 4e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gtctctaattcgcttggtgcaggtcgggaactgatt 41
|||||| |||||||||||||||||||||||||||||
Sbjct: 2 gtctctgattcgcttggtgcaggtcgggaactgatt 37
>48560_gma-miR168:pmrd
Length = 125
Score = 75.8 bits (38), Expect = 9e-15
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 124 cgaattggatcccgccttgcatcaactgaatcggagaccgcg 165
|||||||||||||||||||||||||||||||||||| |||||
Sbjct: 78 cgaattggatcccgccttgcatcaactgaatcggaggccgcg 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 gtctctaattcgcttggtgcaggtcgggaac 36
|||||||||||||||||||||||||||||||
Sbjct: 10 gtctctaattcgcttggtgcaggtcgggaac 40
>51651_ptc-miR168b:pmrd
Length = 136
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 6 gtctctaattcgcttggtgcaggtcgggaactgatt 41
||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtctctaattcgcttggtgcaggtcgggaactgatt 37
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactgaatcggaga 160
||||||||||||||||||||||||||||||||||||
Sbjct: 101 gaattggatcccgccttgcatcaactgaatcggaga 136
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcgga 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 11 attcgcttggtgcaggtcgggaac 34
>46957_ath-miR168a:pmrd
Length = 138
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactgaatcgga 158
||||||||||||||||||||||||||||||||
Sbjct: 96 attggatcccgccttgcatcaactgaatcgga 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 16 attcgcttggtgcaggtcgggaac 39
>54802_vvi-miR168:pmrd
Length = 132
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 gtctctaattcgcttggtgcaggtcgggaac 36
|||||||||||||||||||||||||||||||
Sbjct: 2 gtctctaattcgcttggtgcaggtcgggaac 32
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 131 gatcccgccttgcatcaactgaatcggagac 161
|||||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagac 129
>54375_pts-miR168b:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 122 agcgaattggatcccgccttgcatcaactga 152
|||||||||||||||||||||||||||||||
Sbjct: 110 agcgaattggatcccgccttgcatcaactga 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaactgatt 41
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>46958_ath-miR168b:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaactgatt 41
|||||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgatt 45
>54374_pts-miR168a:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaactgatt 41
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54366_ptr-miR168:pmrd
Length = 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 125 gaattggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaactgatt 41
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>48349_bna-miR168:pmrd
Length = 133
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaactgatt 41
|||||||||||||||||||||||||||
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt 44
>55000_zma-miR168b:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||||||| ||||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcggag 92
>46959_ath-miR168m:pmrd
Length = 104
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 127 attggatcccgccttgcatcaactga 152
||||||||||||||||||||||||||
Sbjct: 79 attggatcccgccttgcatcaactga 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcgggaactg 38
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>54999_zma-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>54637_sof-miR168b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcggag 91
>54636_sof-miR168a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcggag 92
>48873_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48872_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>48871_osa-miR168a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 130 ggatcccgccttgcatcaactgaatcggag 159
||||||||||||||| ||| ||||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcggag 84
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 128 ttggatcccgccttgcatcaactga 152
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcggga 34
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 tcgcttggtgcaggtcggga 34
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
