miRNEST 2.0, an integrative microRNA resource :: BLAST
>54777_vvi-miR159c:pmrd
Length = 190
Score = 103 bits (52), Expect = 7e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||
Sbjct: 7 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 66
Query: 98 ggataccacagccctatccc 117
|||| |||||||||||||||
Sbjct: 67 ggatcccacagccctatccc 86
Score = 93.7 bits (47), Expect = 7e-20
Identities = 76/85 (89%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 151 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 210
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 101 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 157
Query: 211 tgtttggattgaagggagctctaca 235
|||||||||||||||||||||||||
Sbjct: 158 tgtttggattgaagggagctctaca 182
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 91.7 bits (46), Expect = 3e-19
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||
Sbjct: 4 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 63
Query: 98 ggataccacagccctatc 115
|||| |||||| ||||||
Sbjct: 64 ggat-ccacagtcctatc 80
Score = 69.9 bits (35), Expect = 1e-12
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 153 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 212
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 92 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 148
Query: 213 tttggattgaagggagctcta 233
|||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctcta 169
>51604_ptc-miR159c:pmrd
Length = 183
Score = 91.7 bits (46), Expect = 3e-19
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 98 ggataccacagccctatc 115
|||| |||||| ||||||
Sbjct: 69 ggat-ccacagtcctatc 85
Score = 69.9 bits (35), Expect = 1e-12
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 153 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 212
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 213 tttggattgaagggagctcta 233
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>51603_ptc-miR159b:pmrd
Length = 187
Score = 91.7 bits (46), Expect = 3e-19
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||
Sbjct: 9 agtggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctat 68
Query: 98 ggataccacagccctatc 115
| || |||||||||||||
Sbjct: 69 gaatcccacagccctatc 86
Score = 69.9 bits (35), Expect = 1e-12
Identities = 61/69 (88%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 165 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 224
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 169
Query: 225 ggagctcta 233
|||||||||
Sbjct: 170 ggagctcta 178
>51602_ptc-miR159a:pmrd
Length = 183
Score = 91.7 bits (46), Expect = 3e-19
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 38 agtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctat 97
||||||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 98 ggataccacagccctatc 115
|||| |||||| ||||||
Sbjct: 69 ggat-ccacagtcctatc 85
Score = 69.9 bits (35), Expect = 1e-12
Identities = 70/81 (86%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 153 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 212
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 213 tttggattgaagggagctcta 233
|||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctcta 174
>54378_pvu-miR159:pmrd
Length = 174
Score = 83.8 bits (42), Expect = 6e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 39 gtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatg 98
|||||||||||| ||||||||| ||||||||| | |||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 99 gataccacag 108
||| ||||||
Sbjct: 61 gatcccacag 70
Score = 50.1 bits (25), Expect = 9e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 206 atccttgtttggattgaagggagctctac 234
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>54377_pvu-miR159:pmrd
Length = 174
Score = 83.8 bits (42), Expect = 6e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 39 gtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatg 98
|||||||||||| ||||||||| ||||||||| | |||| |||||||||||| |||||||
Sbjct: 1 gtggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatg 60
Query: 99 gataccacag 108
||| ||||||
Sbjct: 61 gatcccacag 70
Score = 50.1 bits (25), Expect = 9e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 206 atccttgtttggattgaagggagctctac 234
|||||| ||||||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctctac 174
>48539_gma-miR159a:pmrd
Length = 214
Score = 81.8 bits (41), Expect = 3e-16
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 36 gaagtggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagct 95
||||||||||||||| ||||||||| ||||||||| | |||| ||||||||||| ||||
Sbjct: 17 gaagtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagct 76
Query: 96 atggataccacag 108
|||||| ||||||
Sbjct: 77 atggatcccacag 89
Score = 48.1 bits (24), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 208 ccttgtttggattgaagggagctctaca 235
|||| |||||||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctctaca 197
>54540_sly-miR159:pmrd
Length = 177
Score = 56.0 bits (28), Expect = 1e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 40 tggagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatgg 99
||||||||||| |||||||| | | |||| |||| || ||||||||||||| ||||||
Sbjct: 1 tggagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatgg 60
Query: 100 ataccacagccctatc 115
|| || ||||||||||
Sbjct: 61 attcctcagccctatc 76
Score = 44.1 bits (22), Expect = 6e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 200 tgttagatccttgtttggattgaagggagctcta 233
|||| |||| || |||||||||||||||||||||
Sbjct: 144 tgtttgatcattttttggattgaagggagctcta 177
>48701_mtr-miR159c:pmrd
Length = 44
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
||||||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctacatct 26
>48728_mtr-miR319b:pmrd
Length = 42
Score = 50.1 bits (25), Expect = 9e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 214 ttggattgaagggagctctacatct 238
|||||||||||||||||||||||||
Sbjct: 1 ttggattgaagggagctctacatct 25
>54931_zma-miR159b:pmrd
Length = 221
Score = 48.1 bits (24), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 211 tgtttggattgaagggagctctacatct 238
|||||||||||||||||||||| |||||
Sbjct: 180 tgtttggattgaagggagctctgcatct 207
>48686_ltu-miR159:pmrd
Length = 345
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctaca 235
|||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctaca 23
>48395_bra-miR159a:pmrd
Length = 185
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctaca 235
|||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctaca 185
>48339_bna-miR159:pmrd
Length = 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctaca 235
|||||||||||||||||||||||
Sbjct: 161 tttggattgaagggagctctaca 183
>54674_tae-miR159b:pmrd
Length = 255
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 230 tttggattgaagggagctctgcatct 255
>54673_tae-miR159a:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 tgtttggattgaagggagctct 232
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>48824_osa-miR159f:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 ttggattgaagggagctctaca 235
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
>48820_osa-miR159b:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 158 tttggattgaagggagctctgcatct 183
>48819_osa-miR159a:pmrd
Length = 272
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 242 tttggattgaagggagctctgcatct 267
>48796_oru-miR159:pmrd
Length = 274
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 242 tttggattgaagggagctctgcatct 267
>48657_hvv-miR159b:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 211 tgtttggattgaagggagctct 232
||||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctct 173
>48656_hvv-miR159a:pmrd
Length = 303
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatct 26
>46932_ath-miR159b:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 6e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctacatct 238
|||||||||||||||||||| |||||
Sbjct: 168 tttggattgaagggagctcttcatct 193
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 6e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 213 tttggattgaagggagctctac 234
||||||||||||||||||||||
Sbjct: 163 tttggattgaagggagctctac 184
