miRNEST 2.0, an integrative microRNA resource :: BLAST
>48493_ghr-miR162a:pmrd
Length = 148
Score = 137 bits (69), Expect = 3e-33
Identities = 91/97 (93%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaa 87
||||||||||||||||||||||||||||||||| || |||||||||||| | || |||||
Sbjct: 22 cactggaggcagcggttcatcgatctcttcctg-agaattttgttgtgagaataacacaa 80
Query: 88 acacatgaatcgatcgataaacctctgcatccagcgc 124
| |||||||||||||||||||||||||||||||||||
Sbjct: 81 atacatgaatcgatcgataaacctctgcatccagcgc 117
>54387_rco-miR162:pmrd
Length = 96
Score = 119 bits (60), Expect = 6e-28
Identities = 88/96 (91%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 28 cactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagca-ca 86
||||||||||||||||||||||||||||||||||| ||||||||||||||| | | |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataa 60
Query: 87 aacacatgaatcgatcgataaacctctgcatccagc 122
||| ||||||||||||||||||||||||||||||||
Sbjct: 61 aacgcatgaatcgatcgataaacctctgcatccagc 96
>48423_cpa-miR162a:pmrd
Length = 109
Score = 105 bits (53), Expect = 9e-24
Identities = 91/100 (91%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 24 aagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagc 83
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| | |
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctg--ggaatttggtgtgaaa-aatc 63
Query: 84 acaaacacatgaatcgatcgataaacctctgcatccagcg 123
||| | ||||||||||||||||||||||||||||||||||
Sbjct: 64 acaga-acatgaatcgatcgataaacctctgcatccagcg 102
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 93.7 bits (47), Expect = 4e-20
Identities = 92/104 (88%), Gaps = 6/104 (5%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttag 48
Query: 83 cac-aaacacatgaatcgatcgataaacctctgcatccagcgct 125
||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 47 cacgaaaaacatgaaccgatcgataaacctctgcatccagcgct 4
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 93.7 bits (47), Expect = 4e-20
Identities = 92/104 (88%), Gaps = 6/104 (5%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 102 gaagacactggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttag 48
Query: 83 cac-aaacacatgaatcgatcgataaacctctgcatccagcgct 125
||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 47 cacgaaaaacatgaaccgatcgataaacctctgcatccagcgct 4
>51616_ptc-miR162a:pmrd
Length = 107
Score = 93.7 bits (47), Expect = 4e-20
Identities = 92/104 (88%), Gaps = 6/104 (5%)
Strand = Plus / Plus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 4 gaagacactggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttag 58
Query: 83 cac-aaacacatgaatcgatcgataaacctctgcatccagcgct 125
||| ||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 59 cacgaaaaacatgaaccgatcgataaacctctgcatccagcgct 102
>48545_gma-miR162a:pmrd
Length = 102
Score = 75.8 bits (38), Expect = 8e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 91 catgaatcgatcgataaacctctgcatccagcgctcac 128
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagcgctcac 100
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 22 tgaagtcactggaggcagcggttcatcgatctcttcctg 60
||||||||||||| |||||||||||||||||||||||||
Sbjct: 2 tgaagtcactggatgcagcggttcatcgatctcttcctg 40
>54784_vvi-miR162:pmrd
Length = 103
Score = 71.9 bits (36), Expect = 1e-13
Identities = 90/107 (84%), Gaps = 7/107 (6%)
Strand = Plus / Plus
Query: 22 tgaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaatta 81
||||||||||||| |||||||||||||||||||||||| || ||||||||||| |
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatctcttcct----gaaattgttgtgaaaaaa 56
Query: 82 gcacaaacacatgaatcgatcgataaacctctgcatccagcgctcac 128
||| | || |||||| ||||||||||||||||||||||| ||||
Sbjct: 57 gcaga---tcaagaatcggtcgataaacctctgcatccagcgttcac 100
>48682_llu-miR162:pmrd
Length = 80
Score = 63.9 bits (32), Expect = 3e-11
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 78 attagcacaaacacatgaatcgatcgataaacctctgcatccag 121
|||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 38 attaacacaaac-catgaatcgatcgataaacctctgcatccag 80
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 94 gaatcgatcgataaacctctgcatccagcgct 125
||||||||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatccagcgct 11
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 22 tgaagtcactggaggcagcggttcatcgatc 52
||||||| |||||||||||||||||||||||
Sbjct: 110 tgaagtcgctggaggcagcggttcatcgatc 80
>46938_ath-miR162b:pmrd
Length = 111
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccagcgct 125
||||||||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatccagcgct 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 22 tgaagtcactggaggcagcggttcatcgatc 52
||||||| |||||||||||||||||||||||
Sbjct: 4 tgaagtcgctggaggcagcggttcatcgatc 34
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 25 agtcactggaggcagcggttcatcgatctcttcctg 60
|||| |||||||||||||||||||||||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 91 catgaatcgatcgataaacctctgcatccagcg 123
||||||| |||||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatccagcg 111
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 47
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 46 cacgaacaacacgaaccgatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 49
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 48 cacgaacaacacgaaccgatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 103 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 49
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 48 cacgaacaacacgaaccgatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Minus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 101 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 47
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 46 cacgaacaacacgaaccgatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Plus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 58
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 59 cacgaacaacacgaaccgatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 85/100 (85%), Gaps = 6/100 (6%)
Strand = Plus / Plus
Query: 23 gaagtcactggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattag 82
|||| |||||||||||||||||||||||||| ||||| || |||||| |||| ||
Sbjct: 4 gaagacactggaggcagcggttcatcgatcttttcct-gaagatttttttgt----ttta 58
Query: 83 cacaaac-acatgaatcgatcgataaacctctgcatccag 121
||| ||| ||| ||| ||||||||||||||||||||||||
Sbjct: 59 cacgaacaacacgaaccgatcgataaacctctgcatccag 98
>48685_lsa-miR162:pmrd
Length = 89
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 101 tcgataaacctctgcatccagcgctcacc 129
|||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcacc 29
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccag 121
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 56.0 bits (28), Expect = 8e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 90 acatgaatcgatcgataaacctctgcatccag 121
|||||||||| |||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatccag 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 30 ctggaggcagcggttcatcgatctcttcctg 60
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
>48546_gma-miR162m:pmrd
Length = 367
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 101 tcgataaacctctgcatccagcgctcac 128
||||||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgctcac 28
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 90 acatgaatcgatcgataaacctctgcatcca 120
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 30 ctggaggcagcggttcatcgatctcttcctg 60
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 90 acatgaatcgatcgataaacctctgcatcca 120
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 31 tggaggcagcggttcatcgatctcttcctg 60
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccag 121
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccag 121
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccag 121
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 94 gaatcgatcgataaacctctgcatccag 121
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 91 catgaatcgatcgataaacctctgcatccag 121
||||||||| ||||||||||| |||||||||
Sbjct: 58 catgaatcggtcgataaacctttgcatccag 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 30 ctggaggcagcggttcatcgatct 53
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
