miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>54780_vvi-miR160c:pmrd
          Length = 106

 Score = 77.8 bits (39), Expect = 1e-15
 Identities = 79/90 (87%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                      
Query: 9  tgtgcctggctccctgtatgccacacgtagagacccatctgttt--atgatcggcta-ct 65
          |||||||||||||||||||||||||||||||||||  ||  |||    ||| |||||  |
Sbjct: 9  tgtgcctggctccctgtatgccacacgtagagaccactccctttcccggattggctattt 68

                                        
Query: 66 gcgggtggcgtgcgaggagccaagcatacc 95
          ||||||||||||||||||||||||||||||
Sbjct: 69 gcgggtggcgtgcgaggagccaagcatacc 98




>51608_ptc-miR160a:pmrd
          Length = 102

 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 74/87 (85%), Gaps = 3/87 (3%)
 Strand = Plus / Plus

                                                                      
Query: 11 tgcctggctccctgtatgccacacgtagagacccatct---gtttatgatcggctactgc 67
          ||||||||||||||||||||||| | | ||||| ||||   ||||  ||| ||||  |||
Sbjct: 11 tgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgttgc 70

                                     
Query: 68 gggtggcgtgcgaggagccaagcatac 94
           ||||||||||||||||||||||||||
Sbjct: 71 cggtggcgtgcgaggagccaagcatac 97




>48791_oba-miR160:pmrd
          Length = 90

 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                            
Query: 61 ctactgcgggtggcgtgcgaggagccaagcatac 94
          |||| |||||||||||||||||||||||||||||
Sbjct: 57 ctacggcgggtggcgtgcgaggagccaagcatac 90



 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccac 25




>53874_ptc-miRf12052-akr:pmrd
          Length = 110

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcatac 94
          |||| |||| ||||||||||||||||||||||||||
Sbjct: 64 ggctgctgccggtggcgtgcgaggagccaagcatac 99




>51611_ptc-miR160d:pmrd
          Length = 103

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcatac 94
          |||| |||| ||||||||||||||||||||||||||
Sbjct: 63 ggctgctgccggtggcgtgcgaggagccaagcatac 98




>48833_osa-miR160n:pmrd
          Length = 131

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 61  ctactgcgggtggcgtgcgaggagccaagcat 92
           ||||||||| ||||||||||||||||||||||
Sbjct: 100 ctactgcggatggcgtgcgaggagccaagcat 131



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22




>48829_osa-miR160d:pmrd
          Length = 142

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 61  ctactgcgggtggcgtgcgaggagccaagcat 92
           ||||||||| ||||||||||||||||||||||
Sbjct: 107 ctactgcggatggcgtgcgaggagccaagcat 138



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 8  tgcctggctccctgtatgccac 29




>54407_sbi-miR160d:pmrd
          Length = 100

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 61  ctactgcgggtggcgtgcgaggagccaagca 91
           ||||||||| |||||||||||||||||||||
Sbjct: 70  ctactgcggatggcgtgcgaggagccaagca 100



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22




>54939_zma-miR160b:pmrd
          Length = 121

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgtgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgccacac 44



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 68  gggtggcgtgcgaggagccaagcat 92
           ||||||||||| |||||||||||||
Sbjct: 78  gggtggcgtgcaaggagccaagcat 102




>48826_osa-miR160a:pmrd
          Length = 88

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 9  tgtgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||||
Sbjct: 2  tgtgcctggctccctgtatgccacac 27



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 68 gggtggcgtgcgaggagccaagcat 92
          ||||||||||| |||||||||||||
Sbjct: 62 gggtggcgtgcaaggagccaagcat 86




>54938_zma-miR160a:pmrd
          Length = 104

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 10 gtgcctggctccctgtatgccacac 34
          |||||||||||||||||||||||||
Sbjct: 9  gtgcctggctccctgtatgccacac 33




>54947_zma-miR160m:pmrd
          Length = 81

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccacac 24



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 68 gggtggcgtgcgaggagccaagca 91
          ||||||||||| ||||||||||||
Sbjct: 58 gggtggcgtgcaaggagccaagca 81




>54945_zma-miR160h:pmrd
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccacac 24




>54944_zma-miR160g:pmrd
          Length = 86

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccacac 24




>54940_zma-miR160c:pmrd
          Length = 100

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 5  tgtgcctggctccctgtatgccac 28




>54675_tae-miR160:pmrd
          Length = 148

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 61  ctactgcgggtggcgtgcgaggagccaagcat 92
           |||| |||| ||||||||||||||||||||||
Sbjct: 81  ctaccgcggatggcgtgcgaggagccaagcat 112



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgccac 43




>54405_sbi-miR160b:pmrd
          Length = 82

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccacac 24



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 68 gggtggcgtgcgaggagccaagca 91
          ||||||||||| ||||||||||||
Sbjct: 59 gggtggcgtgcaaggagccaagca 82




>54404_sbi-miR160a:pmrd
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 11 tgcctggctccctgtatgccacac 34
          ||||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccacac 24




>48828_osa-miR160c:pmrd
          Length = 99

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 9  tgtgcctggctccctgtatgccac 32
          ||||||||||||||||||||||||
Sbjct: 5  tgtgcctggctccctgtatgccac 28




>47338_ath-miRf10238-akr:pmrd
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 gtgcctggctccctgtatgccaca 33
          ||||||||||||||||||||||||
Sbjct: 4  gtgcctggctccctgtatgccaca 27




>46935_ath-miR160b:pmrd
          Length = 89

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 gtgcctggctccctgtatgccaca 33
          ||||||||||||||||||||||||
Sbjct: 4  gtgcctggctccctgtatgccaca 27




>51610_ptc-miR160c:pmrd
          Length = 98

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 9  tgtgcctggctccctgtatgcca 31




>51609_ptc-miR160b:pmrd
          Length = 98

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 9  tgtgcctggctccctgtatgcca 31




>51334_pga-miR160:pmrd
          Length = 80

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 11 tgcctggctccctgtatgccaca 33
          |||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccaca 23




>48827_osa-miR160b:pmrd
          Length = 139

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 10 gtgcctggctccctgtatgccac 32
          |||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgccac 51



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 68  gggtggcgtgcgaggagccaagcat 92
           ||||||||||| |||||||||||||
Sbjct: 88  gggtggcgtgcaaggagccaagcat 112




>48704_mtr-miR160e:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 4  tgtgcctggctccctgtatgcca 26




>48703_mtr-miR160d:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 4  tgtgcctggctccctgtatgcca 26




>48702_mtr-miR160b:pmrd
          Length = 91

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 4  tgtgcctggctccctgtatgcca 26




>48542_gma-miR160a:pmrd
          Length = 119

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tgtgcctggctccctgtatgcca 31
          |||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41




>54946_zma-miR160i:pmrd
          Length = 81

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 2  tgcctggctccctgtatgccac 23



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 64 ctgcgggtggcgtgcgaggagccaagcat 92
          |||||| |||||||||||| |||||||||
Sbjct: 53 ctgcggctggcgtgcgaggtgccaagcat 81




>54942_zma-miR160e:pmrd
          Length = 94

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 9  tgcctggctccctgtatgccac 30



 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                       
Query: 64 ctgcgggtggcgtgcgaggagccaagcat 92
          |||||| |||||||||||| |||||||||
Sbjct: 59 ctgcggctggcgtgcgaggtgccaagcat 87




>54941_zma-miR160d:pmrd
          Length = 142

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 63  actgcgggtggcgtgcgaggagccaagcat 92
           ||||||| ||||||||| ||||||||||||
Sbjct: 95  actgcggatggcgtgcgtggagccaagcat 124




>54759_ttu-miR160a:pmrd
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22




>54575_smo-miR160b:pmrd
          Length = 108

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34




>54408_sbi-miR160e:pmrd
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 64 ctgcgggtggcgtgcgaggagccaagca 91
          |||||| |||||||||||| ||||||||
Sbjct: 68 ctgcggctggcgtgcgaggtgccaagca 95




>54406_sbi-miR160c:pmrd
          Length = 83

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22




>51364_ppt-miR160f:pmrd
          Length = 138

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51




>51363_ppt-miR160e:pmrd
          Length = 138

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51




>51359_ppt-miR160a:pmrd
          Length = 99

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32




>48832_osa-miR160m:pmrd
          Length = 82

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgccac 22



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 68 gggtggcgtgcgaggagccaagca 91
          ||||||||||| ||||||||||||
Sbjct: 59 gggtggcgtgcaaggagccaagca 82




>46936_ath-miR160c:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 11 tgcctggctccctgtatgccac 32
          ||||||||||||||||||||||
Sbjct: 5  tgcctggctccctgtatgccac 26




>54783_vvi-miR160f:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31




>54781_vvi-miR160d:pmrd
          Length = 102

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31




>54574_smo-miR160a:pmrd
          Length = 106

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31




>54541_sly-miR160a:pmrd
          Length = 129

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40




>51367_ppt-miR160i:pmrd
          Length = 139

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 12 gcctggctccctgtatgccac 32
          |||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51




>48658_hvv-miR160a:pmrd
          Length = 344

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  tgcctggctccctgtatgcca 31
           |||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344




>48397_bra-miR160a:pmrd
          Length = 127

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46




>48396_bra-miR160a:pmrd
          Length = 127

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46




>47213_ath-miRf10113-akr:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgcca 24




>46934_ath-miR160a:pmrd
          Length = 85

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgcca 24




>46865_aqc-miR160b:pmrd
          Length = 82

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 11 tgcctggctccctgtatgcca 31
          |||||||||||||||||||||
Sbjct: 1  tgcctggctccctgtatgcca 21