miRNEST 2.0, an integrative microRNA resource :: BLAST
>55049_zma-miR319a:pmrd
Length = 209
Score = 256 bits (129), Expect = 5e-69
Identities = 168/181 (92%)
Strand = Plus / Plus
Query: 1 tctctggaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgc 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12 tctctggaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgc 71
Query: 61 cgactcatccattcacctaccaagatccatggacgcggaatgtcttggtagctgattgga 120
|||||||||||||||||| |||||| |||||||| | ||||||||||| || |||
Sbjct: 72 cgactcatccattcacctgccaagaaccatggacaggtctggtcttggtagccgagtggg 131
Query: 121 tggcgcgggagctaaaattaagctctacgctgtttgtggttggactgaagggtgctccct 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccct 191
Query: 181 t 181
|
Sbjct: 192 t 192
>54469_sbi-miR319b:pmrd
Length = 179
Score = 200 bits (101), Expect = 3e-52
Identities = 159/179 (88%), Gaps = 7/179 (3%)
Strand = Plus / Plus
Query: 10 gagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactcatc 69
||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
Query: 70 cattcacctaccaagatccatggacgcggaat-------gtcttggtagctgattggatg 122
|||||||||||||||| |||||||| | || ||||||||||| || ||| ||
Sbjct: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
Query: 123 gcgcgggagctaaaattaagctctacgctgtttgtggttggactgaagggtgctccctt 181
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
>55051_zma-miR319c:pmrd
Length = 216
Score = 192 bits (97), Expect = 7e-50
Identities = 163/184 (88%), Gaps = 7/184 (3%)
Strand = Plus / Plus
Query: 5 tggaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgac 64
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 16 tggaagagagctctcttcagtccactctaaaatggctgtagggtttcattagctgccgac 75
Query: 65 tcatccattcacctaccaagatccatgg--acgcggaa-----tgtcttggtagctgatt 117
|||||||||||||| |||||| |||||| | |||| | ||||||||||| || |
Sbjct: 76 tcatccattcacctgccaagaaccatgggcaagcggtaggtctggtcttggtagccgagt 135
Query: 118 ggatggcgcgggagctaaaattaagctctacgctgtttgtggttggactgaagggtgctc 177
|| |||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct: 136 gggtggcgcgggagctaaaatcaaactctacgctgtttacggttggactgaagggtgctc 195
Query: 178 cctt 181
||||
Sbjct: 196 cctt 199
>48914_osa-miR319a:pmrd
Length = 191
Score = 182 bits (92), Expect = 6e-47
Identities = 159/180 (88%), Gaps = 1/180 (0%)
Strand = Plus / Plus
Query: 7 gaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactc 66
|||||||||||||||||||||||||| | ||||| ||||||||| |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
Query: 67 atccattcacctaccaagatccatggacgcg-gaatgtcttggtagctgattggatggcg 125
||||||||||||||||||| || | | | | || |||||||||| || |||||| ||
Sbjct: 68 atccattcacctaccaagaaagttgcaggagtgtatctcttggtagcggactggatgacg 127
Query: 126 cgggagctaaaattaagctctacgctgtttgtggttggactgaagggtgctcccttgctc 185
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 128 cgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctcccttgctc 187
>46884_aqc-miR319:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 agagagctctcttcagtccactc 31
|||||||||||||||||||||||
Sbjct: 1 agagagctctcttcagtccactc 23
>54844_vvi-miR319c:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 7 gaagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactc 66
|||||||||| |||||||||||||| |||| ||||| || |||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 67 at 68
||
Sbjct: 68 at 69
>55052_zma-miR319d:pmrd
Length = 212
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccct 180
|||||||||||||||||||||
Sbjct: 174 ttggactgaagggtgctccct 194
>55050_zma-miR319b:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccct 180
|||||||||||||||||||||
Sbjct: 175 ttggactgaagggtgctccct 195
>54642_sof-miR319a:pmrd
Length = 539
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccct 180
|||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccct 21
>54468_sbi-miR319:pmrd
Length = 249
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccct 180
|||||||||||||||||||||
Sbjct: 191 ttggactgaagggtgctccct 211
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 58/69 (84%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 aagagagctctcttcagtccactctgaaatggccgtagggttt-cattagctgccgactc 66
||||||||| |||||||||||||| | || || ||||||| |||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatggacgggcgaagggtttggattagctgccgactc 68
Query: 67 atccattca 75
|| ||||||
Sbjct: 69 attcattca 77
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 1e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 8 aagagagctctcttcagtccactctgaaatggccgtagggtttcattagctgccgactca 67
||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 68 t 68
|
Sbjct: 69 t 69
>48915_osa-miR319b:pmrd
Length = 197
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccct 180
|||||||||||||||||||||
Sbjct: 168 ttggactgaagggtgctccct 188
>55053_zma-miR319e:pmrd
Length = 173
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggtgctccc 179
||||||||||||||||||||
Sbjct: 154 ttggactgaagggtgctccc 173
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 attagctgccgactcatccattca 75
||||||||||||||||| ||||||
Sbjct: 54 attagctgccgactcattcattca 77
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 attagctgccgactcatccattca 75
||||||||||||||||| ||||||
Sbjct: 42 attagctgccgactcattcattca 65
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 attagctgccgactcatccattca 75
||||||||||||||||| ||||||
Sbjct: 56 attagctgccgactcattcattca 79
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 attagctgccgactcatccattca 75
||||||||||||||||| ||||||
Sbjct: 54 attagctgccgactcattcattca 77
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 attagctgccgactcatccattca 75
||||||||||||||||| ||||||
Sbjct: 55 attagctgccgactcattcattca 78
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aagagagctctcttcagtccactc 31
||||||||| ||||||||||||||
Sbjct: 19 aagagagctttcttcagtccactc 42
