miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54512_sbi-miR437p:pmrd
Length = 188
Score = 93.7 bits (47), Expect = 5e-20
Identities = 83/94 (88%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 103 atttcatggtggatttgtaacgaaactaatttgatgttgtcgatgttggtgcattttttc 162
||||||||||||||||| | |||||||||||||| |||| ||||||| |||||||||
Sbjct: 95 atttcatggtggatttg--atgaaactaatttgattttgtatgtgttggtccattttttc 152
Query: 163 tataaacttggtgaaagttcgagaagtttgactt 196
||||||||||| |||||| ||||||||||||||
Sbjct: 153 aataaacttggtcaaagttagagaagtttgactt 186
>55112_zma-miR437f:pmrd
Length = 342
Score = 89.7 bits (45), Expect = 8e-19
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 124 gaaactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcg 183
|||||| |||||||||||| || || |||||||||||||||||||||||| |||||| |
Sbjct: 74 gaaactgatttgatgttgtatatatttgtgcattttttctataaacttggtcaaagttag 15
Query: 184 agaagtttgactt 196
|||||||||||||
Sbjct: 14 agaagtttgactt 2
>55107_zma-miR437a:pmrd
Length = 342
Score = 89.7 bits (45), Expect = 8e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 124 gaaactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcg 183
|||||| |||||||||||| || || |||||||||||||||||||||||| |||||| |
Sbjct: 269 gaaactgatttgatgttgtatatatttgtgcattttttctataaacttggtcaaagttag 328
Query: 184 agaagtttgactt 196
|||||||||||||
Sbjct: 329 agaagtttgactt 341
>54500_sbi-miR437b:pmrd
Length = 171
Score = 85.7 bits (43), Expect = 1e-17
Identities = 87/98 (88%), Gaps = 4/98 (4%)
Strand = Plus / Plus
Query: 99 acatatttcatggtggatttgtaacgaaactaatttgatgttgtcgatgttggtgcattt 158
|||||||||||||| ||| |||| |||| |||||||||||| |||||||||||||||
Sbjct: 78 acatatttcatggtagat--gtaatgaaa-taatttgatgtttcagatgttggtgcattt 134
Query: 159 tttctataaacttggtgaaagttcgagaagtttgactt 196
| |||||||||||||| |||||| ||||||||||||||
Sbjct: 135 t-tctataaacttggtcaaagttagagaagtttgactt 171
>54504_sbi-miR437g:pmrd
Length = 176
Score = 81.8 bits (41), Expect = 2e-16
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 124 gaaactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcg 183
||||||| ||||||||||| ||||||| |||| |||| ||||||||||||| |||||| |
Sbjct: 103 gaaactagtttgatgttgtagatgttgatgcaatttt-ctataaacttggtcaaagttag 161
Query: 184 agaagtttgactt 196
|||||||||||||
Sbjct: 162 agaagtttgactt 174
>54517_sbi-miR437u:pmrd
Length = 164
Score = 73.8 bits (37), Expect = 5e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 124 gaaactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcg 183
|||||||||||||||| | ||| |||| | ||||| ||||||||||||||||||||| |
Sbjct: 93 gaaactaatttgatgtcatagatattggcgtatttt-tctataaacttggtgaaagttag 151
Query: 184 agaagtttgactt 196
|||||||||||||
Sbjct: 152 agaagtttgactt 164
>54503_sbi-miR437f:pmrd
Length = 174
Score = 73.8 bits (37), Expect = 5e-14
Identities = 85/98 (86%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 99 acatatttcatggtggatttgtaacgaaactaatttgatgttgtcgatgttggtgcattt 158
|||||||||||| ||||||| || |||||||||||| ||||| || |||||||| ||
Sbjct: 81 acatatttcatgttggattt--aatgaaactaatttgttgttg---atcttggtgcactt 135
Query: 159 tttctataaacttggtgaaagttcgagaagtttgactt 196
|| ||||||||||||| |||||| ||||||||||||||
Sbjct: 136 tt-ctataaacttggtcaaagttagagaagtttgactt 172
>54501_sbi-miR437d:pmrd
Length = 136
Score = 69.9 bits (35), Expect = 8e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 128 ctaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcgagaa 187
||||| ||||||||| || |||||||||||| ||||||||||||| |||||| |||||
Sbjct: 67 ctaatgtgatgttgtaaatattggtgcattttc-ctataaacttggttaaagttagagaa 125
Query: 188 gtttgacttgg 198
|||||||||||
Sbjct: 126 gtttgacttgg 136
>54519_sbi-miR437w:pmrd
Length = 173
Score = 65.9 bits (33), Expect = 1e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 156 ttttttctataaacttggtgaaagttcgagaagtttgactt 196
||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 133 ttttttctaaaaacttggtgaaagttagagaagtttgactt 173
Score = 48.1 bits (24), Expect = 3e-06
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 127 actaatttgatgttgtcgatgttggtgcattttttctataaacttggt 174
||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct: 65 actaatttgatgttggaaatgttgatgcattttt-ctataaacttggt 19
>54518_sbi-miR437v:pmrd
Length = 114
Score = 65.9 bits (33), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 132 tttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcgagaagttt 191
|||||| |||| ||||||| |||||||| ||||||||||||| |||||| |||||||||
Sbjct: 51 tttgatattgtagatgttgatgcatttt-tctataaacttggacaaagttagagaagttt 109
Query: 192 gactt 196
|||||
Sbjct: 110 gactt 114
>54516_sbi-miR437t:pmrd
Length = 170
Score = 65.9 bits (33), Expect = 1e-11
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 144 gatgttggtgcattttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||| ||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 119 gatgtttgtgcatttt-tctataaacttggtcaaagttagagaagtttgactt 170
>48988_osa-miR437:pmrd
Length = 213
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||||| |||||| ||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 ttagctttgtcctaagtcaaacttctataac 38
|||| ||||||||||||||||||||| ||||
Sbjct: 188 ttagttttgtcctaagtcaaacttctctaac 158
>48987_osa-miR437:pmrd
Length = 213
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||||| |||||| ||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 ttagctttgtcctaagtcaaacttctataac 38
|||| ||||||||||||||||||||| ||||
Sbjct: 188 ttagttttgtcctaagtcaaacttctctaac 158
>48986_osa-miR437:pmrd
Length = 213
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||||| |||||| ||||||||||||||
Sbjct: 136 tttttctataaacttggtcaaagttagagaagtttgactt 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 8 ttagctttgtcctaagtcaaacttctataac 38
|||| ||||||||||||||||||||| ||||
Sbjct: 188 ttagttttgtcctaagtcaaacttctctaac 158
>54506_sbi-miR437j:pmrd
Length = 172
Score = 58.0 bits (29), Expect = 3e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 158 ttttctataaacttggtgaaagttcgagaagtttgac 194
||||||||||||||||| |||||| ||||||||||||
Sbjct: 37 ttttctataaacttggtcaaagttagagaagtttgac 1
>54505_sbi-miR437i:pmrd
Length = 170
Score = 58.0 bits (29), Expect = 3e-09
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 120 taacgaaactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaag 179
|||| ||||||||| |||| ||| ||| ||||||||||| ||||||||||| || ||||
Sbjct: 96 taacaaaactaatt-gatggtgtagataatggtgcatttt-tctataaactttgtcaaag 153
Query: 180 ttcgagaagtttgactt 196
|| ||||||||||||||
Sbjct: 154 ttagagaagtttgactt 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 159 tttctataaacttggtgaaagttcgagaagtttgac 194
|||||| ||||||||| |||||| |||||||||||
Sbjct: 36 tttctagaaacttggtcaaagttaaagaagtttgac 1
>54651_sof-miR437:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 1e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 126 aactaatttgatgttgtcgatgttggtgcattttttctataaacttggtgaaagttcgag 185
||||| |||||| || | ||| ||||||||||||| ||||||||||| | |||||| |||
Sbjct: 71 aactagtttgatattctagattttggtgcattttt-ctataaacttgatcaaagttagag 13
Query: 186 aagtttgacttg 197
| ||||||||||
Sbjct: 12 aggtttgacttg 1
Score = 52.0 bits (26), Expect = 2e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 155 attttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||| ||||||| | |||||| ||||||||||||||
Sbjct: 107 attttttctaaaaacttgatcaaagttagagaagtttgactt 148
>54510_sbi-miR437n:pmrd
Length = 182
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 141 tttttctacaaacttggttaaagttagagaagtttgactt 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 158 ttttctataaacttggtgaaagttcgaga 186
||||||||||||||||| |||||| ||||
Sbjct: 39 ttttctataaacttggtcaaagttggaga 11
>54507_sbi-miR437k:pmrd
Length = 172
Score = 56.0 bits (28), Expect = 1e-08
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 131 tttttctaaaaacttggtcaaagttagagaagtttgactt 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgac 194
||||||||||| ||||| |||||| ||||||||||||
Sbjct: 40 tttttctataagtttggtcaaagttagagaagtttgac 3
>54526_sbi-miR1435a:pmrd
Length = 287
Score = 52.0 bits (26), Expect = 2e-07
Identities = 69/81 (85%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 99 acatatttcatggtggatttgtaacgaaactaatttgatgttgtcgatgttggtgcattt 158
||||||||||||| ||||| ||| ||||| || |||||||||| ||||||| |||| |
Sbjct: 150 acatatttcatggaggatt--taatgaaacaaacttgatgttgtagatgttgatgca-tc 206
Query: 159 tttctataaacttggtgaaag 179
||||| |||||||||| ||||
Sbjct: 207 tttctgtaaacttggtcaaag 227
>54514_sbi-miR437r:pmrd
Length = 180
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 159 tttctataaacttggtgaaagttcgagaagtttgactt 196
||||||||||||||| |||||| ||||||||||||||
Sbjct: 141 tttctataaacttggccaaagttagagaagtttgactt 178
>51322_pci-miR437:pmrd
Length = 166
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 159 tttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||| |||| | ||||||||||||||
Sbjct: 78 tttctataaacttggtcaaagctagagaagtttgactt 41
>54511_sbi-miR437o:pmrd
Length = 175
Score = 50.1 bits (25), Expect = 7e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 124 gaaactaatttgatgttgtcgatgttggtgcattttt 160
||||||||||||||||||| || | ||||||||||||
Sbjct: 69 gaaactaatttgatgttgtagaggatggtgcattttt 33
Score = 44.1 bits (22), Expect = 4e-05
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 155 attttttctataaacttggtgaaagttcgagaagtttgactt 196
||||||| || |||||| || |||||| ||||||||||||||
Sbjct: 132 attttttataaaaacttagtcaaagttagagaagtttgactt 173
>55111_zma-miR437e:pmrd
Length = 182
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||||| ||||| |||||||||||||
Sbjct: 141 tttttctataaacttggtcgaagttaaagaagtttgactt 180
>54508_sbi-miR437l:pmrd
Length = 170
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||| |||||||| |||||| ||||||||||||||
Sbjct: 131 tttttctaaaaacttggccaaagttagagaagtttgactt 170
Score = 46.1 bits (23), Expect = 1e-05
Identities = 45/50 (90%), Gaps = 3/50 (6%)
Strand = Plus / Minus
Query: 125 aaactaatttgatgttgtcgatgttggtgcattttttctataaacttggt 174
||||||||||| ||||||| ||||||||||| ||||||||||| |||||
Sbjct: 67 aaactaatttggtgttgtc--tgttggtgcat-ttttctataaatttggt 21
>54502_sbi-miR437e:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
||||||| ||||||||| |||||| ||||||||||||||
Sbjct: 62 tttttctgaaaacttggtcaaagttagagaagtttgactt 101
>55108_zma-miR437b:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 158 ttttctataaacttggtgaaagttcgagaagtttgactt 196
||||||||||||||||| |||| | |||||||||||||
Sbjct: 40 ttttctataaacttggtcaaagatacagaagtttgactt 2
Score = 40.1 bits (20), Expect = 7e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 161 tctataaacttggtgaaagttcgagaagtttgactt 196
|||| ||||||| | |||||| ||||||||||||||
Sbjct: 132 tctagaaacttgttcaaagttagagaagtttgactt 167
>54513_sbi-miR437q:pmrd
Length = 160
Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 159 tttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||| | ||||| |||||| ||||||||||||||
Sbjct: 121 tttctatagagttggtaaaagttagagaagtttgactt 158
>55109_zma-miR437c:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 158 ttttctataaacttggtgaaagttcgagaagtttgac 194
||||||||||||||||| |||| | |||||||||||
Sbjct: 37 ttttctataaacttggtcaaagctgaagaagtttgac 1
>54509_sbi-miR437m:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 128 ctaatttgatgttgtcgatgttggtgcattttt 160
|||||||||| || | |||||||||||||||||
Sbjct: 66 ctaatttgatattctagatgttggtgcattttt 34
>55110_zma-miR437d:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 7e-04
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||| ||| | ||||| ||||||||||||||
Sbjct: 136 tttttctataaatttgatctaagttagagaagtttgactt 175
>54515_sbi-miR437s:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 7e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
||||||||||||| ||| |||||| |||||||||||||
Sbjct: 40 tttttctataaacctggacaaagttaaagaagtttgactt 1
>48328_bdi-miR2504b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 7e-04
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 157 tttttctataaacttggtgaaagttcgagaagtttgactt 196
|||||||||||||||||| ||| | |||||||||||||
Sbjct: 40 tttttctataaacttggtcaaacatgaagaagtttgactt 1
