miRNEST 2.0, an integrative microRNA resource :: BLAST
>54691_tae-miR444:pmrd
Length = 426
Score = 103 bits (52), Expect = 3e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 77 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 136
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 122 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcccttt 181
Query: 137 gcca 140
||||
Sbjct: 182 gcca 185
Score = 58.0 bits (29), Expect = 2e-09
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 4 tgcatgtggtggcaccaagcatgaggcaggaactgcattacttgc 48
||||||||| |||||| ||||||||||| |||||||||||||||
Sbjct: 12 tgcatgtggcggcaccgagcatgaggcaacaactgcattacttgc 56
>54742_tae-miR2024a:pmrd
Length = 118
Score = 101 bits (51), Expect = 1e-22
Identities = 103/119 (86%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaaaatcaattggaa 73
||||||||||||||||| ||||||||||||||||||||||| |||||||| | |||
Sbjct: 1 ggcaccaagcatgaggcgacaactgcattacttgcaaggaagttacaaaatcta-tgggt 59
Query: 74 gatcatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||| | ||| |||||| |||||||||||||||| || ||||||||||||| ||||
Sbjct: 60 catcataatcgtgactttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
>54376_pvi-miR444:pmrd
Length = 127
Score = 93.7 bits (47), Expect = 3e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 139
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
Score = 40.1 bits (20), Expect = 4e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 89 tttcttgcaagttgtgcagttgttgcctcaagcttg 124
||||||||||| | |||||||| |||||| ||||||
Sbjct: 50 tttcttgcaagatatgcagttgctgcctctagcttg 15
>49007_osa-miR444f:pmrd
Length = 154
Score = 89.7 bits (45), Expect = 5e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 88 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 56.0 bits (28), Expect = 7e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 10 tggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
|||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct: 2 tggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaa 53
>48798_oru-miR444:pmrd
Length = 165
Score = 89.7 bits (45), Expect = 5e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 88 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 60.0 bits (30), Expect = 5e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 4 tgcatgtggtggcaccaagcatgaggcaggaactgcattacttgcaaggaagtcacaa 61
||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaagggaatcacaa 58
>54743_tae-miR2024b:pmrd
Length = 142
Score = 87.7 bits (44), Expect = 2e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 77 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 132
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 87 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
Score = 46.1 bits (23), Expect = 7e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgc 48
|||||| ||||||||||| |||||||||||||||
Sbjct: 4 ggcaccgagcatgaggcaacaactgcattacttgc 38
>55114_zma-miR444a:pmrd
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 112 tgcctcaagcttgctgcctccctttgcca 140
|||||||||||||||||||||||||||||
Sbjct: 5 tgcctcaagcttgctgcctccctttgcca 33
>55115_zma-miR444b:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 112 tgcctcaagcttgctgcctccctttgcca 140
|||||||||||| ||||||||||||||||
Sbjct: 5 tgcctcaagcttcctgcctccctttgcca 33
>49006_osa-miR444e:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 95 gcaagttgtgcagttgttgcctcaagcttgctgcct 130
||||||| |||||||| |||||||||||| ||||||
Sbjct: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
>48319_bdi-miR444:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 97 aagttgtgcagttgttgcctcaagcttgctgc 128
||||| |||||||| |||||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
