miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54376_pvi-miR444:pmrd
Length = 127
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 cggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttcagacc 65
Query: 61 atacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
>49007_osa-miR444f:pmrd
Length = 154
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 65 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 103 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaa 45
|||||| |||||| |||||||| | |||||||||||
Sbjct: 145 caagcttgaggcaacaactgcacaacttgcaagaaa 110
>48798_oru-miR444:pmrd
Length = 165
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 65 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 108 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 40.1 bits (20), Expect = 3e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaa 45
|||||| |||||| |||||||| | |||||||||||
Sbjct: 150 caagcttgaggcaacaactgcacaacttgcaagaaa 115
>54742_tae-miR2024a:pmrd
Length = 118
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 75 tttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
>54743_tae-miR2024b:pmrd
Length = 142
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 99 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaa 45
|||||| |||||||||||||||| |||||||||||
Sbjct: 134 caagcttgaggcagcaactgcatgacttgcaagaaa 99
>54691_tae-miR444:pmrd
Length = 426
Score = 56.0 bits (28), Expect = 6e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 72 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 115
|||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 177
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcatatcttgcaagaaa 45
|||||| |||||||||||||||| |||||||||||
Sbjct: 169 caagcttgaggcagcaactgcatgacttgcaagaaa 134
>49006_osa-miR444e:pmrd
Length = 140
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 11 aagctagaggcagcaactgcatatcttgcaagaaa 45
|||||||||||| |||||||||| ||||| |||||
Sbjct: 22 aagctagaggcaccaactgcataacttgcgagaaa 56
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 11 aagctagaggcagcaactgcatatcttgc 39
||||| ||||||||||||||||| |||||
Sbjct: 119 aagcttgaggcagcaactgcataacttgc 91
>48319_bdi-miR444:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 80 aagttgtgcagttgttgtctcaagcttgctgc 111
||||| |||||||| || ||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 caagctagaggcagcaactgcata 33
|||||| |||||||||||||||||
Sbjct: 106 caagcttgaggcagcaactgcata 83
