miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54376_pvi-miR444:pmrd
Length = 127
Score = 218 bits (110), Expect = 8e-58
Identities = 122/126 (96%)
Strand = Plus / Plus
Query: 2 gcaaggggtggtgacaagctagaggcagcagctgcatatcctgcaagaaaattggttttc 61
||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 1 gcaagcggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggttttc 60
Query: 62 agaccatacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaccatacctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 120
Query: 122 ctttgc 127
||||||
Sbjct: 121 ctttgc 126
>49007_osa-miR444f:pmrd
Length = 154
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 71 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 103 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
>48798_oru-miR444:pmrd
Length = 165
Score = 85.7 bits (43), Expect = 7e-18
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 71 ctatgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 108 ctatgactttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>54691_tae-miR444:pmrd
Length = 426
Score = 67.9 bits (34), Expect = 2e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgc 127
|||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct: 134 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctccctttgc 183
>54742_tae-miR2024a:pmrd
Length = 118
Score = 63.9 bits (32), Expect = 3e-11
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct: 75 tttctcgcaagttgtgcagttgctgtctcaagcttgctgactcc 118
>54743_tae-miR2024b:pmrd
Length = 142
Score = 56.0 bits (28), Expect = 7e-09
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 121
|||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 99 tttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
>55114_zma-miR444a:pmrd
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 ctcaagcttgctgcctccctttgc 127
||||||||||||||||||||||||
Sbjct: 8 ctcaagcttgctgcctccctttgc 31
>55115_zma-miR444b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 104 ctcaagcttgctgcctccctttgc 127
||||||||| ||||||||||||||
Sbjct: 8 ctcaagcttcctgcctccctttgc 31
>48319_bdi-miR444:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 86 aagttgtgcagttgttgtctcaagcttgctgc 117
||||| |||||||| || ||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
