miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51338_pgl-miR159:pmrd
          Length = 226

 Score =  210 bits (106), Expect = 4e-55
 Identities = 205/231 (88%), Gaps = 9/231 (3%)
 Strand = Plus / Plus

                                                                       
Query: 9   cggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcgttca 68
           |||||||||||||||||||||||||||   |||   ||||||||||||||||||||||||
Sbjct: 1   cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60

                                                                       
Query: 69  tggttcccactagtcctatctcatcacctggagggtttatctgaaagagagggtgagatg 128
           |||||||||||| |||||||||||  | |||||| ||||||||| |||||| | ||||  
Sbjct: 61  tggttcccacta-tcctatctcatggc-tggagg-tttatctgagagagagagagagaga 117

                                                                       
Query: 129 agtcatgagtggcc----tggtgtttggcttgagataggctttgtggcttgcatgaccga 184
            |  |||||||| |    ||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 118 tgagatgagtggtcggtctggtgtt-ggcttgagataggctt-gtggcttgcatgaccga 175

                                                              
Query: 185 ggagctgcaccgtccccttgctggccgctctttggattgaagggagctctg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggagctgcaccgtccccttgctggccgctctttggattgaagggagctctg 226




>54629_sof-miR159b:pmrd
          Length = 266

 Score =  141 bits (71), Expect = 3e-34
 Identities = 81/83 (97%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                       
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 225

                                  
Query: 214 ctttggattgaagggagctctgc 236
           |||||||||||||||||||||||
Sbjct: 226 ctttggattgaagggagctctgc 248



 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 80/90 (88%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
           |||||||||||||||||||||||||||| |||| ||  |  |||| ||| | ||||||||
Sbjct: 17  gaagcggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgctcg 75

                                         
Query: 65  ttcatggttcccactagtcctatctcatca 94
           |||||||||||||||| |||||||||||||
Sbjct: 76  ttcatggttcccacta-tcctatctcatca 104




>54628_sof-miR159a:pmrd
          Length = 265

 Score =  141 bits (71), Expect = 3e-34
 Identities = 81/83 (97%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                       
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 224

                                  
Query: 214 ctttggattgaagggagctctgc 236
           |||||||||||||||||||||||
Sbjct: 225 ctttggattgaagggagctctgc 247



 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 80/90 (88%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
           |||||||||||||||||||||||||||| |||| ||  |  |||||| | | ||||||||
Sbjct: 17  gaagcggagctcctatcattccaatgaagggccgttctgaagggttgttcc-gctgctcg 75

                                         
Query: 65  ttcatggttcccactagtcctatctcatca 94
           |||||||||||||||| |||||||||||||
Sbjct: 76  ttcatggttcccacta-tcctatctcatca 104




>54930_zma-miR159a:pmrd
          Length = 246

 Score =  133 bits (67), Expect = 7e-32
 Identities = 80/83 (96%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                       
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
           ||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 147 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 205

                                  
Query: 214 ctttggattgaagggagctctgc 236
           |||||||||||||||||||||||
Sbjct: 206 ctttggattgaagggagctctgc 228



 Score = 91.7 bits (46), Expect = 2e-19
 Identities = 80/90 (88%), Gaps = 1/90 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
           |||||||||||||||||||||||||||| || | || ||  ||| |||| | ||||||||
Sbjct: 17  gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 76

                                         
Query: 65  ttcatggttcccactagtcctatctcatca 94
           |||||||||||||||| |||||||||||||
Sbjct: 77  ttcatggttcccacta-tcctatctcatca 105




>54631_sof-miR159d:pmrd
          Length = 265

 Score =  125 bits (63), Expect = 2e-29
 Identities = 69/71 (97%)
 Strand = Plus / Plus

                                                                       
Query: 166 ttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaa 225
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaa 236

                      
Query: 226 gggagctctgc 236
           |||||||||||
Sbjct: 237 gggagctctgc 247



 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 80/90 (88%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
           |||||||||||||||||||||||||||| |||| ||  |  |||||| | | ||||||||
Sbjct: 17  gaagcggagctcctatcattccaatgaagggccgttctgaagggttgttcc-gctgctcg 75

                                         
Query: 65  ttcatggttcccactagtcctatctcatca 94
           |||||||||||||||| |||||||||||||
Sbjct: 76  ttcatggttcccacta-tcctatctcatca 104




>54632_sof-miR159e:pmrd
          Length = 264

 Score =  121 bits (61), Expect = 3e-28
 Identities = 77/81 (95%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 154 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 213
           ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 165 ttgagataggctt-gtggtttgcatgaccgaagagctgcaccgtccccttgctggccgct 223

                                
Query: 214 ctttggattgaagggagctct 234
           |||||||||||| ||||||||
Sbjct: 224 ctttggattgaaaggagctct 244



 Score = 83.8 bits (42), Expect = 6e-17
 Identities = 80/90 (88%), Gaps = 2/90 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 64
           |||||||||||||||||||||||||||| |||| ||  |  |||| ||| | ||||||||
Sbjct: 16  gaagcggagctcctatcattccaatgaagggccgttctgaagggt-ggttccgctgctcg 74

                                         
Query: 65  ttcatggttcccactagtcctatctcatca 94
           |||||||||||||||| |||||||||||||
Sbjct: 75  ttcatggttcccacta-tcctatctcatca 103




>54392_sar-miR159:pmrd
          Length = 175

 Score =  113 bits (57), Expect = 6e-26
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                       
Query: 167 tgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaag 226
           ||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 107 tgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctttggattgaag 166

                    
Query: 227 ggagctctg 235
           |||||||||
Sbjct: 167 ggagctctg 175



 Score = 71.9 bits (36), Expect = 2e-13
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                      
Query: 10 ggagctcctatcattccaatgaaaggccctt-tcgctgggttggtacagctgctcgttca 68
          |||||||||||||||||||||||||| | |  | |  ||| |||||||||||||||||||
Sbjct: 2  ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61

                      
Query: 69 tggttcccacta 80
          ||||||||||||
Sbjct: 62 tggttcccacta 73




>54931_zma-miR159b:pmrd
          Length = 221

 Score = 87.7 bits (44), Expect = 4e-18
 Identities = 83/92 (90%), Gaps = 3/92 (3%)
 Strand = Plus / Plus

                                                                       
Query: 152 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgtcccctt-gctggcc 210
           ||||||||| ||||| |||| |||||||||||||||||||||| |||||||| | || ||
Sbjct: 120 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcac-gtccccttcgttgacc 177

                                           
Query: 211 gctctttggattgaagggagctctgcgtcttg 242
           ||| |||||||||||||||||||||| |||||
Sbjct: 178 gctgtttggattgaagggagctctgcatcttg 209



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 43/45 (95%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                        
Query: 50  tggtacagctgctcgttcatggttcccactagtcctatctcatca 94
           |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 61  tggtacagctgctcgttcatggttcccact-gtcccatctcatca 104




>54934_zma-miR159e:pmrd
          Length = 203

 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 76/86 (88%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                       
Query: 152 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgtcccctt-gctggcc 210
           ||||||||| ||||| |||| ||||||||||||||||||||  ||||||||| | || ||
Sbjct: 119 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 177

                                     
Query: 211 gctctttggattgaagggagctctgc 236
           ||| |||||| |||||||||||||||
Sbjct: 178 gctgtttggagtgaagggagctctgc 203



 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 43/45 (95%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                       
Query: 50 tggtacagctgctcgttcatggttcccactagtcctatctcatca 94
          |||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 43 tggtacagctgctcgttcatggttcccact-gtcccatctcatca 86




>48820_osa-miR159b:pmrd
          Length = 188

 Score = 69.9 bits (35), Expect = 9e-13
 Identities = 75/87 (86%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                       
Query: 156 gagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 215
           ||||||||||| |||| |||||||||| |||||| | | |  | |||||||| || ||||
Sbjct: 100 gagataggctt-gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactct 158

                                      
Query: 216 ttggattgaagggagctctgcgtcttg 242
           ||||||||||||||||||||| |||||
Sbjct: 159 ttggattgaagggagctctgcatcttg 185



 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 53 tacagctgctcgttcatggttcccacta 80
          |||||||||| |||||||||||||||||
Sbjct: 54 tacagctgcttgttcatggttcccacta 81




>54673_tae-miR159a:pmrd
          Length = 177

 Score = 67.9 bits (34), Expect = 3e-12
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 167 tgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaag 226
           ||||| ||||||||||||||||| ||  ||  |||| |||| ||||| ||||||||||||
Sbjct: 106 tgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtttggattgaag 165

                     
Query: 227 ggagctctgc 236
           ||||||||||
Sbjct: 166 ggagctctgc 175



 Score = 58.0 bits (29), Expect = 3e-09
 Identities = 42/45 (93%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                       
Query: 46 gggttggtacagctgctcgttcatggttcccactagtcctatctc 90
          ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 39 gggtttgtgcagctgctcgttcatggttcccacta-tcctatctc 82




>48657_hvv-miR159b:pmrd
          Length = 174

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 69/80 (86%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                       
Query: 156 gagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 215
           ||||||||||| |||| |||||||| |||||||| ||  ||  |||| |||| ||||| |
Sbjct: 96  gagataggctt-gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgt 154

                               
Query: 216 ttggattgaagggagctctg 235
           ||||||||||||||||||||
Sbjct: 155 ttggattgaagggagctctg 174



 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Plus

                                                       
Query: 46 gggttggtacagctgctcgttcatggttcccactagtcctatctc 90
          ||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct: 38 gggtttgtgcagctgcttgttcatggttcccacta-tcctatctc 81




>48819_osa-miR159a:pmrd
          Length = 272

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 212 ctctttggattgaagggagctctgcgtctt 241
           ||||||||||||||||||||||||| ||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268




>48796_oru-miR159:pmrd
          Length = 274

 Score = 52.0 bits (26), Expect = 2e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 212 ctctttggattgaagggagctctgcgtctt 241
           ||||||||||||||||||||||||| ||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268




>54674_tae-miR159b:pmrd
          Length = 255

 Score = 50.1 bits (25), Expect = 8e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 212 ctctttggattgaagggagctctgc 236
           |||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgc 251




>48825_osa-miR159m:pmrd
          Length = 249

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 212 ctctttggattgaagggagctctg 235
           ||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249




>48656_hvv-miR159a:pmrd
          Length = 303

 Score = 48.1 bits (24), Expect = 3e-06
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 215 tttggattgaagggagctctgcgtcttg 242
           |||||||||||||||||||||| |||||
Sbjct: 1   tttggattgaagggagctctgcatcttg 28




>54937_zma-miR159m:pmrd
          Length = 457

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 215 tttggattgaagggagctctgc 236
           ||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctgc 22




>54653_spr-miR159:pmrd
          Length = 392

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 215 tttggattgaagggagctctgc 236
           ||||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctctgc 22




>54378_pvu-miR159:pmrd
          Length = 174

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172




>54377_pvu-miR159:pmrd
          Length = 174

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172




>48699_mtr-miR159a:pmrd
          Length = 168

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167




>48539_gma-miR159a:pmrd
          Length = 214

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194




>48395_bra-miR159a:pmrd
          Length = 185

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182




>48339_bna-miR159:pmrd
          Length = 183

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180




>46932_ath-miR159b:pmrd
          Length = 196

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 166 tctttggattgaagggagctct 187




>46931_ath-miR159a:pmrd
          Length = 184

 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 213 tctttggattgaagggagctct 234
           ||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182




>54777_vvi-miR159c:pmrd
          Length = 190

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179




>54540_sly-miR159:pmrd
          Length = 177

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176




>52093_ptc-miRf10271-akr:pmrd
          Length = 174

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168




>51604_ptc-miR159c:pmrd
          Length = 183

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>51603_ptc-miR159b:pmrd
          Length = 187

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177




>51602_ptc-miR159a:pmrd
          Length = 183

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173




>48701_mtr-miR159c:pmrd
          Length = 44

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20




>48686_ltu-miR159:pmrd
          Length = 345

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 tttggattgaagggagctct 234
           ||||||||||||||||||||
Sbjct: 1   tttggattgaagggagctct 20