miRNEST 2.0, an integrative microRNA resource :: BLAST
>51338_pgl-miR159:pmrd
Length = 226
Score = 210 bits (106), Expect = 4e-55
Identities = 205/231 (88%), Gaps = 9/231 (3%)
Strand = Plus / Plus
Query: 10 cggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcgttca 69
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 cggagctcctatcattccaatgaaaggttgtttttgtgggttggtacagctgctcgttca 60
Query: 70 tggttcccactagtcctatctcatcacctggagggtttatctgaaagagagggtgagatg 129
|||||||||||| ||||||||||| | |||||| ||||||||| |||||| | ||||
Sbjct: 61 tggttcccacta-tcctatctcatggc-tggagg-tttatctgagagagagagagagaga 117
Query: 130 agtcatgagtggcc----tggtgtttggcttgagataggctttgtggcttgcatgaccga 185
| |||||||| | ||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 118 tgagatgagtggtcggtctggtgtt-ggcttgagataggctt-gtggcttgcatgaccga 175
Query: 186 ggagctgcaccgtccccttgctggccgctctttggattgaagggagctctg 236
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ggagctgcaccgtccccttgctggccgctctttggattgaagggagctctg 226
>54629_sof-miR159b:pmrd
Length = 266
Score = 141 bits (71), Expect = 3e-34
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 155 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 214
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 225
Query: 215 ctttggattgaagggagctctgc 237
|||||||||||||||||||||||
Sbjct: 226 ctttggattgaagggagctctgc 248
Score = 85.7 bits (43), Expect = 1e-17
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 gattggaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagct 60
|||| |||||||||||||||||||||||||||| |||| || | ||| |||| | |||
Sbjct: 12 gatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttccgct 70
Query: 61 gctcgttcatggttcccactagtcctatctcatca 95
||||||||||||||||||||| |||||||||||||
Sbjct: 71 gctcgttcatggttcccacta-tcctatctcatca 104
>54628_sof-miR159a:pmrd
Length = 265
Score = 141 bits (71), Expect = 3e-34
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 155 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 214
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgtccccttgctggccgct 224
Query: 215 ctttggattgaagggagctctgc 237
|||||||||||||||||||||||
Sbjct: 225 ctttggattgaagggagctctgc 247
Score = 85.7 bits (43), Expect = 1e-17
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 gattggaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagct 60
|||| |||||||||||||||||||||||||||| |||| || | ||||| || | |||
Sbjct: 12 gatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtt-gttccgct 70
Query: 61 gctcgttcatggttcccactagtcctatctcatca 95
||||||||||||||||||||| |||||||||||||
Sbjct: 71 gctcgttcatggttcccacta-tcctatctcatca 104
>54930_zma-miR159a:pmrd
Length = 246
Score = 133 bits (67), Expect = 7e-32
Identities = 80/83 (96%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 155 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 214
||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 147 ttgagataggctt-gtggtttgcatgaccgaggagctgcaccgcccccttgctggccgct 205
Query: 215 ctttggattgaagggagctctgc 237
|||||||||||||||||||||||
Sbjct: 206 ctttggattgaagggagctctgc 228
Score = 91.7 bits (46), Expect = 2e-19
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 6 gaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagctgctcg 65
|||||||||||||||||||||||||||| || | || || ||| |||| | ||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 76
Query: 66 ttcatggttcccactagtcctatctcatca 95
|||||||||||||||| |||||||||||||
Sbjct: 77 ttcatggttcccacta-tcctatctcatca 105
>54631_sof-miR159d:pmrd
Length = 265
Score = 125 bits (63), Expect = 2e-29
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 167 ttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaa 226
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctctttggattgaa 236
Query: 227 gggagctctgc 237
|||||||||||
Sbjct: 237 gggagctctgc 247
Score = 85.7 bits (43), Expect = 1e-17
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 gattggaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagct 60
|||| |||||||||||||||||||||||||||| |||| || | ||||| || | |||
Sbjct: 12 gatttgaagcggagctcctatcattccaatgaagggccgttctgaagggtt-gttccgct 70
Query: 61 gctcgttcatggttcccactagtcctatctcatca 95
||||||||||||||||||||| |||||||||||||
Sbjct: 71 gctcgttcatggttcccacta-tcctatctcatca 104
>54632_sof-miR159e:pmrd
Length = 264
Score = 121 bits (61), Expect = 3e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 155 ttgagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgct 214
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 165 ttgagataggctt-gtggtttgcatgaccgaagagctgcaccgtccccttgctggccgct 223
Query: 215 ctttggattgaagggagctct 235
|||||||||||| ||||||||
Sbjct: 224 ctttggattgaaaggagctct 244
Score = 85.7 bits (43), Expect = 1e-17
Identities = 84/95 (88%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 1 gattggaagcggagctcctatcattccaatgaaaggccctttcgctgggttggtacagct 60
|||| |||||||||||||||||||||||||||| |||| || | ||| |||| | |||
Sbjct: 11 gatttgaagcggagctcctatcattccaatgaagggccgttctgaaggg-tggttccgct 69
Query: 61 gctcgttcatggttcccactagtcctatctcatca 95
||||||||||||||||||||| |||||||||||||
Sbjct: 70 gctcgttcatggttcccacta-tcctatctcatca 103
>54392_sar-miR159:pmrd
Length = 175
Score = 113 bits (57), Expect = 6e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 168 tgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaag 227
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 107 tgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctttggattgaag 166
Query: 228 ggagctctg 236
|||||||||
Sbjct: 167 ggagctctg 175
Score = 71.9 bits (36), Expect = 2e-13
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 11 ggagctcctatcattccaatgaaaggccctt-tcgctgggttggtacagctgctcgttca 69
|||||||||||||||||||||||||| | | | | ||| |||||||||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaaaggtcttgctagaaggggtggtacagctgctcgttca 61
Query: 70 tggttcccacta 81
||||||||||||
Sbjct: 62 tggttcccacta 73
>54931_zma-miR159b:pmrd
Length = 221
Score = 87.7 bits (44), Expect = 4e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 153 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgtcccctt-gctggcc 211
||||||||| ||||| |||| |||||||||||||||||||||| |||||||| | || ||
Sbjct: 120 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcac-gtccccttcgttgacc 177
Query: 212 gctctttggattgaagggagctctgcgtcttg 243
||| |||||||||||||||||||||| |||||
Sbjct: 178 gctgtttggattgaagggagctctgcatcttg 209
Score = 65.9 bits (33), Expect = 1e-11
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 51 tggtacagctgctcgttcatggttcccactagtcctatctcatca 95
|||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 61 tggtacagctgctcgttcatggttcccact-gtcccatctcatca 104
>54934_zma-miR159e:pmrd
Length = 203
Score = 75.8 bits (38), Expect = 1e-14
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 153 gcttgagataggctttgtggcttgcatgaccgaggagctgcaccgtcccctt-gctggcc 211
||||||||| ||||| |||| |||||||||||||||||||| ||||||||| | || ||
Sbjct: 119 gcttgagatgggctt-gtggtttgcatgaccgaggagctgcctcgtccccttcgttgacc 177
Query: 212 gctctttggattgaagggagctctgc 237
||| |||||| |||||||||||||||
Sbjct: 178 gctgtttggagtgaagggagctctgc 203
Score = 65.9 bits (33), Expect = 1e-11
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 51 tggtacagctgctcgttcatggttcccactagtcctatctcatca 95
|||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 43 tggtacagctgctcgttcatggttcccact-gtcccatctcatca 86
>48820_osa-miR159b:pmrd
Length = 188
Score = 71.9 bits (36), Expect = 2e-13
Identities = 76/88 (86%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 157 gagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 216
||||||||||| |||| |||||||||| |||||| | | | | |||||||| || ||||
Sbjct: 100 gagataggctt-gtggtttgcatgaccaaggagccgaatcaactccttgctgaccactct 158
Query: 217 ttggattgaagggagctctgcgtcttga 244
||||||||||||||||||||| ||||||
Sbjct: 159 ttggattgaagggagctctgcatcttga 186
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 tacagctgctcgttcatggttcccacta 81
|||||||||| |||||||||||||||||
Sbjct: 54 tacagctgcttgttcatggttcccacta 81
>54673_tae-miR159a:pmrd
Length = 177
Score = 67.9 bits (34), Expect = 3e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 168 tgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctctttggattgaag 227
||||| ||||||||||||||||| || || |||| |||| ||||| ||||||||||||
Sbjct: 106 tgtggtttgcatgaccgaggagccgcttcgatccctcgctgaccgctgtttggattgaag 165
Query: 228 ggagctctgc 237
||||||||||
Sbjct: 166 ggagctctgc 175
Score = 58.0 bits (29), Expect = 3e-09
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 47 gggttggtacagctgctcgttcatggttcccactagtcctatctc 91
||||| || |||||||||||||||||||||||||| |||||||||
Sbjct: 39 gggtttgtgcagctgctcgttcatggttcccacta-tcctatctc 82
>48657_hvv-miR159b:pmrd
Length = 174
Score = 63.9 bits (32), Expect = 5e-11
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 157 gagataggctttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctct 216
||||||||||| |||| |||||||| |||||||| || || |||| |||| ||||| |
Sbjct: 96 gagataggctt-gtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgt 154
Query: 217 ttggattgaagggagctctg 236
||||||||||||||||||||
Sbjct: 155 ttggattgaagggagctctg 174
Score = 50.1 bits (25), Expect = 8e-07
Identities = 41/45 (91%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 47 gggttggtacagctgctcgttcatggttcccactagtcctatctc 91
||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct: 38 gggtttgtgcagctgcttgttcatggttcccacta-tcctatctc 81
>48819_osa-miR159a:pmrd
Length = 272
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcgtctt 242
||||||||||||||||||||||||| ||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>48796_oru-miR159:pmrd
Length = 274
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgcgtctt 242
||||||||||||||||||||||||| ||||
Sbjct: 239 ctctttggattgaagggagctctgcatctt 268
>54674_tae-miR159b:pmrd
Length = 255
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctgc 237
|||||||||||||||||||||||||
Sbjct: 227 ctctttggattgaagggagctctgc 251
>48656_hvv-miR159a:pmrd
Length = 303
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgcgtcttga 244
|||||||||||||||||||||| ||||||
Sbjct: 1 tttggattgaagggagctctgcatcttga 29
>48825_osa-miR159m:pmrd
Length = 249
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 213 ctctttggattgaagggagctctg 236
||||||||||||||||||||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
>54937_zma-miR159m:pmrd
Length = 457
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgc 237
||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgc 22
>54653_spr-miR159:pmrd
Length = 392
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctctgc 237
||||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctctgc 22
>54378_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 151 tctttggattgaagggagctct 172
>48699_mtr-miR159a:pmrd
Length = 168
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 146 tctttggattgaagggagctct 167
>48539_gma-miR159a:pmrd
Length = 214
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 173 tctttggattgaagggagctct 194
>48395_bra-miR159a:pmrd
Length = 185
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 159 tctttggattgaagggagctct 180
>46932_ath-miR159b:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 166 tctttggattgaagggagctct 187
>46931_ath-miR159a:pmrd
Length = 184
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 214 tctttggattgaagggagctct 235
||||||||||||||||||||||
Sbjct: 161 tctttggattgaagggagctct 182
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctct 179
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>51602_ptc-miR159a:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48701_mtr-miR159c:pmrd
Length = 44
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 216 tttggattgaagggagctct 235
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
