miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51338_pgl-miR159:pmrd
Length = 226
Score = 129 bits (65), Expect = 1e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 171 ttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctc 230
||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct: 146 ttgagataggcttgtggcttgcatgaccgaggagctgcaccgtccccttgctggccgctc 205
Query: 231 tttggattgaaggaagctctg 251
||||||||||||| |||||||
Sbjct: 206 tttggattgaagggagctctg 226
>54629_sof-miR159b:pmrd
Length = 266
Score = 127 bits (64), Expect = 5e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 165 ctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgc 224
Query: 229 tctttggattgaaggaagctctgc 252
||||||||||||||| ||||||||
Sbjct: 225 tctttggattgaagggagctctgc 248
Score = 81.8 bits (41), Expect = 3e-16
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| |||||||||||| |||| ||| ||||||| | ||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggccgttctgaa-gggtggttccgctgctcg 75
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 76 ttcatggttcccactatcctatctcatca 104
>54628_sof-miR159a:pmrd
Length = 265
Score = 127 bits (64), Expect = 5e-30
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 164 ctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgc 223
Query: 229 tctttggattgaaggaagctctgc 252
||||||||||||||| ||||||||
Sbjct: 224 tctttggattgaagggagctctgc 247
Score = 73.8 bits (37), Expect = 6e-14
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| |||||||||||| |||| ||| |||| || | ||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggccgttctgaa-gggttgttccgctgctcg 75
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 76 ttcatggttcccactatcctatctcatca 104
>54930_zma-miR159a:pmrd
Length = 246
Score = 119 bits (60), Expect = 1e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 145 ctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggccgc 204
Query: 229 tctttggattgaaggaagctctgc 252
||||||||||||||| ||||||||
Sbjct: 205 tctttggattgaagggagctctgc 228
Score = 81.8 bits (41), Expect = 3e-16
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| ||||||||||||||||| || || |||| | ||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggtcgttccgaagggctggttccgctgctcg 76
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 77 ttcatggttcccactatcctatctcatca 105
>54632_sof-miR159e:pmrd
Length = 264
Score = 107 bits (54), Expect = 4e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 169 ctttgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgc 228
||||||||||||||||||| ||||||||| || || ||||||| ||||||||||||||||
Sbjct: 163 ctttgagataggcttgtggtttgcatgaccgaagagctgcaccgtccccttgctggccgc 222
Query: 229 tctttggattgaaggaagctct 250
||||||||||||| | ||||||
Sbjct: 223 tctttggattgaaaggagctct 244
Score = 81.8 bits (41), Expect = 3e-16
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| |||||||||||| |||| ||| ||||||| | ||||||||
Sbjct: 16 gaagcggagctcctatcattccaatgaagggccgttctgaa-gggtggttccgctgctcg 74
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 75 ttcatggttcccactatcctatctcatca 103
>54631_sof-miR159d:pmrd
Length = 265
Score = 105 bits (53), Expect = 2e-23
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 172 tgagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctct 231
||||||| |||||||| ||||||||| || || ||||||| |||||||||||||||||||
Sbjct: 167 tgagatacgcttgtggtttgcatgaccgatgagctgcaccgtccccttgctggccgctct 226
Query: 232 ttggattgaaggaagctctgc 252
|||||||||||| ||||||||
Sbjct: 227 ttggattgaagggagctctgc 247
Score = 73.8 bits (37), Expect = 6e-14
Identities = 77/89 (86%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 gaagcggagctcctatctctccaatgaagggtcgttttgatcgggtggtacagctgctcg 76
||||||||||||||||| |||||||||||| |||| ||| |||| || | ||||||||
Sbjct: 17 gaagcggagctcctatcattccaatgaagggccgttctgaa-gggttgttccgctgctcg 75
Query: 77 ttcatggttaccactgacctatctcatca 105
||||||||| ||||| ||||||||||||
Sbjct: 76 ttcatggttcccactatcctatctcatca 104
>54392_sar-miR159:pmrd
Length = 175
Score = 93.7 bits (47), Expect = 7e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 173 gagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctctt 232
||||||||| ||||||||||||||| ||||| | ||| | |||||| |||||||||||||
Sbjct: 97 gagataggcctgtggcttgcatgaccgaggagccgcatcgtcccctcgctggccgctctt 156
Query: 233 tggattgaaggaagctctg 251
||||||||||| |||||||
Sbjct: 157 tggattgaagggagctctg 175
Score = 58.0 bits (29), Expect = 4e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 59 gggtggtacagctgctcgttcatggttaccact 91
||||||||||||||||||||||||||| |||||
Sbjct: 40 gggtggtacagctgctcgttcatggttcccact 72
>54934_zma-miR159e:pmrd
Length = 203
Score = 69.9 bits (35), Expect = 1e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 59 gggtggtacagctgctcgttcatggttaccactgacctatctcatca 105
||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct: 40 gggtggtacagctgctcgttcatggttcccactgtcccatctcatca 86
>54931_zma-miR159b:pmrd
Length = 221
Score = 69.9 bits (35), Expect = 1e-12
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 59 gggtggtacagctgctcgttcatggttaccactgacctatctcatca 105
||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct: 58 gggtggtacagctgctcgttcatggttcccactgtcccatctcatca 104
Score = 61.9 bits (31), Expect = 2e-10
Identities = 72/83 (86%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 171 ttgagataggcttgtggcttgcatgactgaggaactgcaccatcccctt-gctggccgct 229
||||||| ||||||||| ||||||||| ||||| |||||| ||||||| | || |||||
Sbjct: 122 ttgagatgggcttgtggtttgcatgaccgaggagctgcacg-tccccttcgttgaccgct 180
Query: 230 ctttggattgaaggaagctctgc 252
||||||||||||| ||||||||
Sbjct: 181 gtttggattgaagggagctctgc 203
>48820_osa-miR159b:pmrd
Length = 188
Score = 65.9 bits (33), Expect = 2e-11
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 173 gagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctctt 232
||||||||||||||| ||||||||| |||| | | | || | |||||||| || |||||
Sbjct: 100 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 159
Query: 233 tggattgaaggaagctctgcgtctcgatc 261
||||||||||| |||||||| ||| ||||
Sbjct: 160 tggattgaagggagctctgcatcttgatc 188
>54673_tae-miR159a:pmrd
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 67 cagctgctcgttcatggttaccactgacctatctc 101
||||||||||||||||||| ||||| ||||||||
Sbjct: 48 cagctgctcgttcatggttcccactatcctatctc 82
Score = 44.1 bits (22), Expect = 6e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 215 cccttgctggccgctctttggattgaaggaagctctgc 252
|||| |||| ||||| ||||||||||||| ||||||||
Sbjct: 138 ccctcgctgaccgctgtttggattgaagggagctctgc 175
Score = 40.1 bits (20), Expect = 9e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 ggagctcctatctctccaatgaagggtc 49
|||||||||||| ||||||||||||||
Sbjct: 3 ggagctcctatcattccaatgaagggtc 30
>48657_hvv-miR159b:pmrd
Length = 174
Score = 46.1 bits (23), Expect = 1e-05
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 173 gagataggcttgtggcttgcatgactgaggaactgcaccatccccttgctggccgctctt 232
||||||||||||||| |||||||| ||||| | || | |||| |||| ||||| ||
Sbjct: 96 gagataggcttgtggtttgcatgatcgaggagccgcttcgatccctcgctgaccgctgtt 155
Query: 233 tggattgaaggaagctctg 251
||||||||||| |||||||
Sbjct: 156 tggattgaagggagctctg 174
Score = 40.1 bits (20), Expect = 9e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 22 ggagctcctatctctccaatgaagggtc 49
|||||||||||| ||||||||||||||
Sbjct: 2 ggagctcctatcattccaatgaagggtc 29
>54674_tae-miR159b:pmrd
Length = 255
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 228 ctctttggattgaaggaagctctgc 252
|||||||||||||||| ||||||||
Sbjct: 227 ctctttggattgaagggagctctgc 251
>48819_osa-miR159a:pmrd
Length = 272
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 228 ctctttggattgaaggaagctctgc 252
|||||||||||||||| ||||||||
Sbjct: 239 ctctttggattgaagggagctctgc 263
>48796_oru-miR159:pmrd
Length = 274
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 228 ctctttggattgaaggaagctctgc 252
|||||||||||||||| ||||||||
Sbjct: 239 ctctttggattgaagggagctctgc 263
>54777_vvi-miR159c:pmrd
Length = 190
Score = 40.1 bits (20), Expect = 9e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 gataggcttgtggcttgcat 194
||||||||||||||||||||
Sbjct: 104 gataggcttgtggcttgcat 123
>48825_osa-miR159m:pmrd
Length = 249
Score = 40.1 bits (20), Expect = 9e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 228 ctctttggattgaaggaagctctg 251
|||||||||||||||| |||||||
Sbjct: 226 ctctttggattgaagggagctctg 249
