miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54843_vvi-miR319b:pmrd
Length = 194
Score = 65.9 bits (33), Expect = 1e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 122 caacgatgcatgagctgtatttagctatcgctgtcgcgtcttggactgaagggagctccc 181
|||||||||| |||||| || || ||| |||||| ||||||||||||||||||||||||
Sbjct: 123 caacgatgcaggagctgcgttcagttatggctgtcacgtcttggactgaagggagctccc 182
Query: 182 t 182
|
Sbjct: 183 t 183
>48687_ltu-miR319:pmrd
Length = 167
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 152 ctgtcgcgtcttggactgaagggagctccc 181
||||| ||||||||||||||||||||||||
Sbjct: 138 ctgtctcgtcttggactgaagggagctccc 167
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctccct 182
>54844_vvi-miR319c:pmrd
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctccct 171
>54583_smo-miR319:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctccct 206
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctccct 185
>51709_ptc-miR319c:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctccct 188
>51707_ptc-miR319a:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctccct 180
>51390_ppt-miR319e:pmrd
Length = 174
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctccc 167
>51389_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51388_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51387_ppt-miR319d:pmrd
Length = 170
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 144 tcttggactgaagggagctccc 165
>51386_ppt-miR319c:pmrd
Length = 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctccc 181
||||||||||||||||||||||
Sbjct: 153 tcttggactgaagggagctccc 174
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctccct 190
>48572_gma-miR319a:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctccct 189
>46993_ath-miR319b:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctccct 172
>46884_aqc-miR319:pmrd
Length = 177
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccct 182
||||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctccct 175
>54754_tar-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>54686_tae-miR319a:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctccc 181
|||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctccc 196
>54670_svi-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>54391_rin-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>51708_ptc-miR319b:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 157 ttggactgaagggagctccct 177
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctcc 180
|||||||||||||||||||||
Sbjct: 139 tcttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 tcttggactgaagggagctcc 180
|||||||||||||||||||||
Sbjct: 147 tcttggactgaagggagctcc 167
>48788_nof-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccct 183
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccct 182
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccct 182
>48415_bvl-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 37 ttggactgaagggagctccct 17
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccct 174
>46860_ape-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 161 ttggactgaagggagctccct 181
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccct 182
|||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccct 180
>54847_vvi-miR319g:pmrd
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162 ttggactgaagggagctccc 181
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>51713_ptc-miR319g:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 161 cttggactgaagggagctcc 180
||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcc 192
