miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51554_pta-miR159b:pmrd
Length = 184
Score = 60.0 bits (30), Expect = 7e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 52 tagggatgattcaactgctggttcatggattcta 85
||||||||||||||||||||||||||||| ||||
Sbjct: 38 tagggatgattcaactgctggttcatggactcta 71
Score = 48.1 bits (24), Expect = 3e-06
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 119 ggcaagataatggtgtgcatggcacaggagttggaatgccacta 162
||||||||||||||||||||| ||| ||||| | | ||||||||
Sbjct: 104 ggcaagataatggtgtgcatgacacgggagtcgtattgccacta 147
>48823_osa-miR159e:pmrd
Length = 191
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 174 attggattgaagggagctcctc 195
||||||||||||||||||||||
Sbjct: 161 attggattgaagggagctcctc 182
>54936_zma-miR159g:pmrd
Length = 180
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 160 ttggattgaagggagctcctc 180
>54935_zma-miR159f:pmrd
Length = 181
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 161 ttggattgaagggagctcctc 181
>54933_zma-miR159d:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 179 ttggattgaagggagctcctc 199
>54932_zma-miR159c:pmrd
Length = 217
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 179 ttggattgaagggagctcctc 199
>54630_sof-miR159c:pmrd
Length = 238
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 200 ttggattgaagggagctcctc 220
>54403_sbi-miR159b:pmrd
Length = 253
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcctc 195
|||||||||||||||||||||
Sbjct: 215 ttggattgaagggagctcctc 235
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcct 194
||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctcct 178
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcct 194
||||||||||||||||||||
Sbjct: 157 ttggattgaagggagctcct 176
>51605_ptc-miR159d:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcct 194
||||||||||||||||||||
Sbjct: 166 ttggattgaagggagctcct 185
>48822_osa-miR159d:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 attggattgaagggagctcc 193
||||||||||||||||||||
Sbjct: 159 attggattgaagggagctcc 178
>48821_osa-miR159c:pmrd
Length = 197
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 attggattgaagggagctcc 193
||||||||||||||||||||
Sbjct: 167 attggattgaagggagctcc 186
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 ttggattgaagggagctcct 194
||||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcct 215
