miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>51564_pta-miR396:pmrd
          Length = 119

 Score =  236 bits (119), Expect = 3e-63
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaatcttgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagatt 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaatcttgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagatt 60

                                                                      
Query: 68  ctgatttctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtaggattc 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgatttctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtaggattc 119




>47009_ath-miR396b:pmrd
          Length = 135

 Score = 61.9 bits (31), Expect = 1e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 15 gtcatacttttccacagctttcttgaacttt 45
          |||||||||||||||||||||||||||||||
Sbjct: 2  gtcatacttttccacagctttcttgaacttt 32




>54868_vvi-miR396a:pmrd
          Length = 116

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 14 tgtcatacttttccacagctttcttgaact 43
          |||||| |||||||||||||||||||||||
Sbjct: 4  tgtcatgcttttccacagctttcttgaact 33




>51738_ptc-miR396e:pmrd
          Length = 145

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 gtcatacttttccacagctttcttgaactt 44
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 90  aagttcaagaaaactgtgggaaagcatg 117
           |||||||||||| |||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaagcatg 4




>51737_ptc-miR396d:pmrd
          Length = 154

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 gtcatacttttccacagctttcttgaactt 44
          ||||| ||||||||||||||||||||||||
Sbjct: 2  gtcatgcttttccacagctttcttgaactt 31



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 90  aagttcaagaaaactgtgggaaagcatg 117
           |||||||||||| |||||| ||||||||
Sbjct: 31  aagttcaagaaagctgtggaaaagcatg 4




>48579_gma-miR396b:pmrd
          Length = 126

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 15 gtcatacttttccacagctttcttgaactt 44
          ||||| ||||||||||||||||||||||||
Sbjct: 12 gtcatgcttttccacagctttcttgaactt 41



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 90  aagttcaagaaaactgtgggaaagcatg 117
           |||||||||||| |||||| ||||||||
Sbjct: 41  aagttcaagaaagctgtggaaaagcatg 14




>54869_vvi-miR396b:pmrd
          Length = 108

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 cttttccacagctttcttgaactt 44
          ||||||||||||||||||||||||
Sbjct: 11 cttttccacagctttcttgaactt 34



 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 90  aagttcaagaaaactgtgggaaagcatggtagga 123
           |||||||||||| |||||| ||||||||| ||||
Sbjct: 34  aagttcaagaaagctgtggaaaagcatggcagga 1



 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 90  aagttcaagaaaactgtgggaaagcatgg 118
           |||||||||||| |||||||||| |||||
Sbjct: 77  aagttcaagaaagctgtgggaaaccatgg 105




>53179_ptc-miRf11357-akr:pmrd
          Length = 141

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 21  cttttccacagctttcttgaactt 44
           ||||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaactt 114



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 90  aagttcaagaaaactgtgggaaagcatg 117
           |||||||||||| |||||| ||||||||
Sbjct: 114 aagttcaagaaagctgtggaaaagcatg 141




>52893_ptc-miRf11071-akr:pmrd
          Length = 148

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 21  cttttccacagctttcttgaactt 44
           ||||||||||||||||||||||||
Sbjct: 145 cttttccacagctttcttgaactt 122




>52080_ptc-miRf10258-akr:pmrd
          Length = 141

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 21  cttttccacagctttcttgaactt 44
           ||||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaactt 114



 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 90  aagttcaagaaaactgtgggaaagcatg 117
           |||||||||||| |||||| ||||||||
Sbjct: 114 aagttcaagaaagctgtggaaaagcatg 141




>48748_mtr-miR396a:pmrd
          Length = 93

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 cttttccacagctttcttgaactt 44
          ||||||||||||||||||||||||
Sbjct: 3  cttttccacagctttcttgaactt 26




>48580_gma-miR396c:pmrd
          Length = 117

 Score = 48.1 bits (24), Expect = 2e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 21 cttttccacagctttcttgaactt 44
          ||||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaactt 41




>52304_ptc-miRf10482-akr:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 22 ttttccacagctttcttgaactt 44
          |||||||||||||||||||||||
Sbjct: 95 ttttccacagctttcttgaactt 73




>51736_ptc-miR396c:pmrd
          Length = 102

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttttccacagctttcttgaactt 44
          |||||||||||||||||||||||
Sbjct: 9  ttttccacagctttcttgaactt 31




>55078_zma-miR396g:pmrd
          Length = 117

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttccacagctttcttgaactt 44
          ||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaactt 23




>55077_zma-miR396f:pmrd
          Length = 166

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttccacagctttcttgaactt 44
          ||||||||||||||||||||||
Sbjct: 2  tttccacagctttcttgaactt 23




>54487_sbi-miR396c:pmrd
          Length = 162

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttccacagctttcttgaactt 44
          ||||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaactt 41




>48947_osa-miR396c:pmrd
          Length = 141

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 23 tttccacagctttcttgaactt 44
          ||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31




>48374_bna-miR396a:pmrd
          Length = 117

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 24 ttccacagctttcttgaacttt 45
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>46888_aqc-miR396b:pmrd
          Length = 89

 Score = 44.1 bits (22), Expect = 3e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 24 ttccacagctttcttgaacttt 45
          ||||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaacttt 22




>55083_zma-miR396l:pmrd
          Length = 97

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55082_zma-miR396k:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55081_zma-miR396j:pmrd
          Length = 98

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55080_zma-miR396i:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>55079_zma-miR396h:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55074_zma-miR396c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 4  ttccacagctttcttgaact 23




>55073_zma-miR396b:pmrd
          Length = 136

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>55072_zma-miR396a:pmrd
          Length = 137

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54871_vvi-miR396d:pmrd
          Length = 120

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54870_vvi-miR396c:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>54645_sof-miR396:pmrd
          Length = 134

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54486_sbi-miR396b:pmrd
          Length = 128

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>54485_sbi-miR396a:pmrd
          Length = 125

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>52339_ptc-miRf10517-akr:pmrd
          Length = 164

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 21 cttttccacagctttcttgaactt 44
          ||||||||| ||||||||||||||
Sbjct: 5  cttttccacggctttcttgaactt 28




>52079_ptc-miRf10257-akr:pmrd
          Length = 130

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 9  ttccacagctttcttgaact 28




>51740_ptc-miR396g:pmrd
          Length = 168

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 21 cttttccacagctttcttgaactt 44
          ||||||||| ||||||||||||||
Sbjct: 8  cttttccacggctttcttgaactt 31




>51735_ptc-miR396b:pmrd
          Length = 132

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>51734_ptc-miR396a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48946_osa-miR396b:pmrd
          Length = 116

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48945_osa-miR396a:pmrd
          Length = 154

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>48680_lja-miR396:pmrd
          Length = 108

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35




>48578_gma-miR396a:pmrd
          Length = 140

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40




>48508_ghr-miR396c:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48507_ghr-miR396b:pmrd
          Length = 115

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20




>48485_gcl-miR396a:pmrd
          Length = 101

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  ttccacagctttcttgaact 43
           ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82




>48110_ath-miRf11010-akr:pmrd
          Length = 165

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37




>47008_ath-miR396a:pmrd
          Length = 151

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30




>46887_aqc-miR396a:pmrd
          Length = 122

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 24 ttccacagctttcttgaact 43
          ||||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaact 20