miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51581_pta-miR952a:pmrd
Length = 450
Score = 884 bits (446), Expect = 0.0
Identities = 449/450 (99%)
Strand = Plus / Plus
Query: 15 gaaccagtagcgtattgaacagagcatgccgttggttgagtaagtacgtcaagggacgaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaccagtagcgtattgaacagagcatgccgttggttgagtaagtacgtcaagggacgaa 60
Query: 75 acagaattaattttcattaacattttattaaccttcaactctgccttggcctagggcagt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagaattaattttcattaacattttattaaccttcaactctgccttggcctagggcagt 120
Query: 135 tcctgaaggtcacattgactggggcgtgatacaacgcgtagtccgctggttgctgcgacc 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctgaaggtcacattgactggggcgtgatacaacgcgtagtccgctggttgctgcgacc 180
Query: 195 attgggactcccccagcctattctcatctgcaacattcgcaagttatttacagtgttgca 254
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 attgggactcccccagcctattctcagctgcaacattcgcaagttatttacagtgttgca 240
Query: 255 gccgagaataaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgta 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgagaataaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgta 300
Query: 315 tcagcgccccaactggtgtgagcttcgggaattgccatatgccaagccagatttgcatgc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcagcgccccaactggtgtgagcttcgggaattgccatatgccaagccagatttgcatgc 360
Query: 375 taataaaacattattcgaaattaattgcgttttgttggttgacagacttcctccaccaat 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taataaaacattattcgaaattaattgcgttttgttggttgacagacttcctccaccaat 420
Query: 435 gacacgctcagttcaatttgctgatggttc 464
||||||||||||||||||||||||||||||
Sbjct: 421 gacacgctcagttcaatttgctgatggttc 450
>51582_pta-miR952b:pmrd
Length = 438
Score = 194 bits (98), Expect = 4e-50
Identities = 358/442 (80%), Gaps = 22/442 (4%)
Strand = Plus / Plus
Query: 28 attgaacagagcatgccgttggttgagtaagtacgtcaagggacgaaacagaattaattt 87
||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14 attgaactgagaatgccattggtggagtaagtacgtcaagggacgaaacagaattaattt 73
Query: 88 tcattaacattttattaaccttcaactctgccttggcctagggcagttcctgaaggtcac 147
| ||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||||
Sbjct: 74 tgattaacattttattaaccttcaactctaccttggcttatggaagttcgtgaaggtcac 133
Query: 148 attgactggggcgtgatacaacgcgtagtccgctggttgctgc----gaccattgggact 203
| ||| ||| | ||||| |||||||||||| | | |||||||||
Sbjct: 134 a------ggg--------caaggactagtctgctggttgctgccacagtcaattgggact 179
Query: 204 cccccagcctattctcatctgcaacattcgcaagttatttacagtgttgcagccgagaat 263
| |||| |||||||| ||||| ||||| |||||||| || ||||||||||||||||
Sbjct: 180 ctcccaagttattctcagctgcagcattccgaagttatt--caatgttgcagccgagaat 237
Query: 264 aaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgtatcagcgccc 323
| ||||| | |||| | | || ||||| |||||| ||||| | |||||| || ||||
Sbjct: 238 attatggggacagtccattg-gtcacaacagccagccgattacaccttgtatgagtgccc 296
Query: 324 caactggtgtgagcttcgggaattgccatatgccaagccagatttgc-atgctaataaaa 382
||||||||||||| ||| ||| ||||| | ||||| |||| |||| | ||||||||||
Sbjct: 297 caactggtgtgagtttcatgaactgccagaagccaaaacagagttgcaacgctaataaaa 356
Query: 383 cattattcgaaattaattgcgttttgttggttgacagacttcctccaccaatgacacgct 442
|||||| | ||||||||| | ||||||||||||||| ||||| ||| | ||| ||||||
Sbjct: 357 cattatgcaaaattaattccattttgttggttgacatacttcatccgctaatagcacgct 416
Query: 443 cagttcaatttgctgatggttc 464
||||||||||||| |||||||
Sbjct: 417 tagttcaatttgctaatggttc 438
