miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51562_pta-miR319:pmrd
Length = 206
Score = 396 bits (200), Expect = e-111
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 1 agtggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agtggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcat 64
Query: 61 gcacaccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 gcacaccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtc 124
Query: 121 acggacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acggacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggt 184
Query: 181 tggactgaagggagctccaa 200
||||||||||||||||||||
Sbjct: 185 tggactgaagggagctccaa 204
>51553_pta-miR159a:pmrd
Length = 210
Score = 396 bits (200), Expect = e-111
Identities = 200/200 (100%)
Strand = Plus / Minus
Query: 1 agtggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 agtggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcat 147
Query: 61 gcacaccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gcacaccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtc 87
Query: 121 acggacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acggacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggt 27
Query: 181 tggactgaagggagctccaa 200
||||||||||||||||||||
Sbjct: 26 tggactgaagggagctccaa 7
>51547_psi-miR159:pmrd
Length = 193
Score = 270 bits (136), Expect = 4e-73
Identities = 182/197 (92%), Gaps = 4/197 (2%)
Strand = Plus / Minus
Query: 3 tggagctcccttcaatccaagaaatgcgtgtttagtgacagtacatctcctgcgtcatgc 62
||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct: 193 tggagctcccttcaatccaaggaatgcgtgtccagtgacaatacatctcctgcgtcatgc 134
Query: 63 acaccactatcctgtcatgcaggtcgattgattgatttgttcaggctgctggagagtcac 122
||||||||||||||||||| || | |||||||||||| |||||||||||| ||||||
Sbjct: 133 acaccactatcctgtcatggagatagattgattgatt----caggctgctggaaagtcac 78
Query: 123 ggacagggaagtagaatgcatgaatcagcagctgaaccaccgctgcacaagctttggttg 182
|||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 77 ggacagggcagtcgaatgcatgaatcagcagctgaaccaccgccgcacaagctttggttg 18
Query: 183 gactgaagggagctcca 199
|||||||||||||||||
Sbjct: 17 gactgaagggagctcca 1
>51605_ptc-miR159d:pmrd
Length = 194
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaagaaa 26
|||||||||||||||||||||||
Sbjct: 184 ggagctcccttcaatccaagaaa 162
>48821_osa-miR159c:pmrd
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 gtggagctcccttcaatccaa 22
|||||||||||||||||||||
Sbjct: 188 gtggagctcccttcaatccaa 168
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 157 ctttgattggactgaagggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 156 ctttgattggactgaagggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 156 ctttgattggactgaagggagctcc 180
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 43 ctttgattggactgaagggagctcc 19
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 148 ctttgattggactgaagggagctcc 172
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 155 ctttgattggactgaagggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctttggttggactgaagggagctcc 198
||||| |||||||||||||||||||
Sbjct: 154 ctttgattggactgaagggagctcc 178
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 177 ggagctcccttcaatccaag 158
>54936_zma-miR159g:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 178 ggagctcccttcaatccaag 159
>54935_zma-miR159f:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 179 ggagctcccttcaatccaag 160
>54933_zma-miR159d:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 197 ggagctcccttcaatccaag 178
>54932_zma-miR159c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 197 ggagctcccttcaatccaag 178
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 175 ggagctcccttcaatccaag 156
>54630_sof-miR159c:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 218 ggagctcccttcaatccaag 199
>54573_smo-miR159:pmrd
Length = 279
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 268 ggagctcccttcaatccaag 249
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 5 gagctcccttcaatccaagaaatg 28
|||||||||||||||||| |||||
Sbjct: 175 gagctcccttcaatccaaaaaatg 152
>54403_sbi-miR159b:pmrd
Length = 253
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 233 ggagctcccttcaatccaag 214
>51555_pta-miR159c:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4 ggagctcccttcaatccaag 23
||||||||||||||||||||
Sbjct: 68 ggagctcccttcaatccaag 49
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 180 ttggactgaagggagctcca 199
||||||||||||||||||||
Sbjct: 149 ttggactgaagggagctcca 168
