miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48704_mtr-miR160e:pmrd
Length = 91
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 6 gtatgtgcctggctccctgtatgccatatacgaagcttattgaaatatcaataacctttg 65
|||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct: 1 gtatgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttg 60
Query: 66 tggatggcgtacgggaagccaggcatattcc 96
||||||||||| | | ||||| |||||||||
Sbjct: 61 tggatggcgtatgaggagccaagcatattcc 91
>48702_mtr-miR160b:pmrd
Length = 91
Score = 117 bits (59), Expect = 2e-27
Identities = 83/91 (91%)
Strand = Plus / Plus
Query: 6 gtatgtgcctggctccctgtatgccatatacgaagcttattgaaatatcaataacctttg 65
|||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct: 1 gtatgtgcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttg 60
Query: 66 tggatggcgtacgggaagccaggcatattcc 96
||||||||||| | | ||||| |||||||||
Sbjct: 61 tggatggcgtatgaggagccaagcatattcc 91
>48542_gma-miR160a:pmrd
Length = 119
Score = 65.9 bits (33), Expect = 5e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 6 gtatgtgcctggctccctgtatgccatatacgaagcttattgaaatatcaataacctttg 65
||||||||||||||||||||||||||| | |||| || ||| |||||| |||||||
Sbjct: 16 gtatgtgcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttg 75
Query: 66 tggatggcgtacgggaagccaggcatatt 94
||||||||||| | | ||||| |||||||
Sbjct: 76 tggatggcgtatgaggagccaagcatatt 104
>51610_ptc-miR160c:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tatgtgcctggctccctgtatgccat 32
||||||||||||||||||||||||||
Sbjct: 7 tatgtgcctggctccctgtatgccat 32
>51609_ptc-miR160b:pmrd
Length = 98
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tatgtgcctggctccctgtatgccat 32
||||||||||||||||||||||||||
Sbjct: 7 tatgtgcctggctccctgtatgccat 32
>54940_zma-miR160c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atgtgcctggctccctgtatgcca 31
||||||||||||||||||||||||
Sbjct: 4 atgtgcctggctccctgtatgcca 27
>48703_mtr-miR160d:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccat 32
||||||||||||||||||||||||
Sbjct: 4 tgtgcctggctccctgtatgccat 27
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatat 34
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatat 27
>46934_ath-miR160a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatat 34
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccatat 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 19 tgtgcctggctccctgtatgcca 41
>54780_vvi-miR160c:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 gtatgtgcctggctccctgtatgccat 32
|||| ||||||||||||||||||||||
Sbjct: 15 gtatatgcctggctccctgtatgccat 41
>48826_osa-miR160a:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 9 gtgcctggctccctgtatgcca 30
>54783_vvi-miR160f:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccat 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatac 36
||||||||||||||||||||| ||||
Sbjct: 1 tgcctggctccctgtatgccacatac 26
>48827_osa-miR160b:pmrd
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 29 gtgcctggctccctgtatgcca 50
>48397_bra-miR160a:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgccat 47
>48396_bra-miR160a:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgccat 47
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgcca 31
||||||||||||||||||||||
Sbjct: 4 gtgcctggctccctgtatgcca 25
>46865_aqc-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccat 32
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccat 22
>54947_zma-miR160m:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54946_zma-miR160i:pmrd
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgcca 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54942_zma-miR160e:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>54782_vvi-miR160e:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 11 tgcctggctccctgaatgccatctaagaagctt 43
>54779_vvi-miR160b:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 11 tgcctggctccctgaatgccatctaagaagctt 43
>54778_vvi-miR160a:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 11 tgcctggctccctgaatgccatctaagaagctt 43
>54759_ttu-miR160a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54675_tae-miR160:pmrd
Length = 148
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgcca 42
>54575_smo-miR160b:pmrd
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgcca 33
>54408_sbi-miR160e:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgcca 32
>51613_ptc-miR160f:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 11 tgcctggctccctgaatgccatctaggaagctt 43
>51612_ptc-miR160e:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 11 tgcctggctccctgaatgccatctaggaagctt 43
>51611_ptc-miR160d:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51365_ppt-miR160g:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
||||||||||| |||||||||| | ||||||||
Sbjct: 30 tgcctggctccttgtatgccatctgcgaagctt 62
>51364_ppt-miR160f:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51363_ppt-miR160e:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgcca 50
>51359_ppt-miR160a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>48833_osa-miR160n:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
>48829_osa-miR160d:pmrd
Length = 142
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgcca 28
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>46936_ath-miR160c:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcca 31
|||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgcca 25
>46864_aqc-miR160a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccatatacgaagctt 43
|||||||||||||| ||||||| || |||||||
Sbjct: 1 tgcctggctccctggatgccatctaagaagctt 33
>54943_zma-miR160f:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcc 40
>54760_ttu-miR160b:pmrd
Length = 218
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>54528_sce-miR160:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgcc 30
||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcc 20
>51615_ptc-miR160h:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccat 32
|||||||||||||||| |||||||
Sbjct: 9 tgtgcctggctccctgcatgccat 32
>51367_ppt-miR160i:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
