miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53947_ptc-miRf12125-akr:pmrd
Length = 75
Score = 65.9 bits (33), Expect = 4e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 60 aaaccgaaccgaaaccggttcaaaccgactggtttcggttcggtt 16
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 42 accggtttcggttcggttt 60
>53731_ptc-miRf11909-akr:pmrd
Length = 74
Score = 65.9 bits (33), Expect = 4e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 60 aaaccgaaccgaaaccggttcaaaccgaccagtttcggttcggtt 16
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 42 accggtttcggttcggttt 60
>53395_ptc-miRf11573-akr:pmrd
Length = 74
Score = 65.9 bits (33), Expect = 4e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||||| |||||||| |||||||||| ||||||||||||||
Sbjct: 60 aaaccgaaccgaaaccggttcaaaccgaccagtttcggttcggtt 16
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 42 accggtttcggttcggttt 60
>52625_ptc-miRf10803-akr:pmrd
Length = 108
Score = 65.9 bits (33), Expect = 4e-12
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct: 101 aaaccgaaccgaaaccggttcaaaccgaccggtttcggtccggtt 57
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 83 accggtttcggttcggttt 101
>52338_ptc-miRf10516-akr:pmrd
Length = 136
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 33 aaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||| |||||||||||||||||||||||||
Sbjct: 126 aaaccggttcaaaccgaccggtttcggttcggtt 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 33 aaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||| ||||| |||||||||||||| ||||
Sbjct: 34 aaaccggttcaaactgaccggtttcggtttggtt 1
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 42 caaaccgaccggtttcggttcggtt 66
||||||||||||||| |||||||||
Sbjct: 71 caaaccgaccggttttggttcggtt 47
>52274_ptc-miRf10452-akr:pmrd
Length = 147
Score = 60.0 bits (30), Expect = 3e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggttt 67
|||||||||| |||||||| ||||||| | ||||||||||||||||
Sbjct: 137 aaaccgaaccaaaaccggttcaaaccggctggtttcggttcggttt 92
>53625_ptc-miRf11803-akr:pmrd
Length = 152
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 caaaccgaccggtttcggttcggtttgg 69
||||||||||||||||||||||||||||
Sbjct: 5 caaaccgaccggtttcggttcggtttgg 32
>54220_ptc-miRf12398-akr:pmrd
Length = 69
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 25 ccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
||||||| ||||||| |||||||||| ||||||||||||||
Sbjct: 54 ccgaaccgaaaccgggtcaaaccgaccagtttcggttcggtt 13
>53849_ptc-miRf12027-akr:pmrd
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 33 aaaccggtccaaaccgaccggtttcggttcgg 64
||||| || |||||||||||||||||||||||
Sbjct: 32 aaaccagttcaaaccgaccggtttcggttcgg 1
>51868_ptc-miRf10046-akr:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 28 aacccaaaccggtccaaaccgaccggtttcggttcggttt 67
|||| |||||||| ||||||| |||| |||||||||||||
Sbjct: 96 aaccgaaaccggttcaaaccggccgggttcggttcggttt 57
>53654_ptc-miRf11832-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccg 52
|||||||||| |||||||| |||||||||||
Sbjct: 3 aaaccgaaccgaaaccggttcaaaccgaccg 33
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 21 accggtttcggttcggttt 3
>53432_ptc-miRf11610-akr:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 28 aacccaaaccggtccaaaccgaccggtttcggttc 62
|||| |||| ||| |||||||||||||||||||||
Sbjct: 81 aaccgaaactggttcaaaccgaccggtttcggttc 47
>53113_ptc-miRf11291-akr:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 33 aaaccggtccaaaccgaccggtttcggttcggttt 67
||||||| |||||||| |||||||||||||||||
Sbjct: 2 aaaccgggtcaaaccgatcggtttcggttcggttt 36
>51988_ptc-miRf10166-akr:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 aaaccgaccggtttcggttcggtttgg 69
||||||||| |||||||||||||||||
Sbjct: 154 aaaccgaccagtttcggttcggtttgg 128
>51851_ptc-miRf10029-akr:pmrd
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccg 52
|||||||||| |||||||| |||||||||||
Sbjct: 79 aaaccgaaccgaaaccggttcaaaccgaccg 49
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 61 accggtttcggttcggttt 79
>52512_ptc-miRf10690-akr:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 cggtccaaaccgaccggtttcggttc 62
|||| |||||||||||||||||||||
Sbjct: 26 cggttcaaaccgaccggtttcggttc 1
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 37 cggtccaaaccgaccggtttcggttcggtt 66
|||| |||||||| ||||||||||||||||
Sbjct: 56 cggttcaaaccgatcggtttcggttcggtt 27
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 37 cggtccaaaccgaccggtttcggttcggtt 66
|||| ||||||||||||||| |||||||||
Sbjct: 81 cggttcaaaccgaccggttttggttcggtt 52
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 37 cggtccaaaccgaccggtttcggttcggtt 66
|||| ||||| |||||||||||||||||||
Sbjct: 106 cggttcaaactgaccggtttcggttcggtt 77
>53948_ptc-miRf12126-akr:pmrd
Length = 158
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 43 aaaccgaccggtttcggttcggttt 67
|||||||||||||||| ||||||||
Sbjct: 158 aaaccgaccggtttcgattcggttt 134
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21 caaaccgaacccaaaccgg 39
|||||||||||||||||||
Sbjct: 65 caaaccgaacccaaaccgg 83
>52930_ptc-miRf11108-akr:pmrd
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttcggttcggtt 66
|||||||||| |||||||| |||||| || | |||||||||||||
Sbjct: 70 aaaccgaaccgaaaccggttcaaaccaacag-tttcggttcggtt 27
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 52 accggtttcggttcggttt 70
>52446_ptc-miRf10624-akr:pmrd
Length = 158
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 43 aaaccgaccggtttcggttcggttt 67
|||||||||||||||| ||||||||
Sbjct: 158 aaaccgaccggtttcgattcggttt 134
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21 caaaccgaacccaaaccgg 39
|||||||||||||||||||
Sbjct: 65 caaaccgaacccaaaccgg 83
>53838_ptc-miRf12016-akr:pmrd
Length = 127
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 23 accggtttcggttcggttt 5
>51831_ptc-miRf10009-akr:pmrd
Length = 99
Score = 38.2 bits (19), Expect = 0.001
Identities = 43/51 (84%), Gaps = 5/51 (9%)
Strand = Plus / Minus
Query: 22 aaaccgaacccaaaccggtccaaaccgaccggtttc-----ggttcggttt 67
|||||||||| |||||||| |||||| ||||||||| ||||||||||
Sbjct: 96 aaaccgaaccgaaaccggttcaaaccaaccggtttcagttcggttcggttt 46
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 accggtttcggttcggttt 67
|||||||||||||||||||
Sbjct: 78 accggtttcggttcggttt 96
